Explore projects

SNP calling pipeline to find homozygote SNPs present in JU2817 strain but not in JU2859

Analysis of cell-cell variability in Lymphoblastoid Cell Lines of the 1000 Genome project

script d'installation des machines virtuelles pour la formation RNAseq du CIRI (2020)

repo with analyses for the LBMC review article on RAPToR

Pipeline used to run deltaTE analysis

Scripts exploring Chimp and Gorilla data with different packages for population genetics (pegas, adegenet, popGenome, etc.)

Positive selection screen on SARS-CoV-2 interactome: Analysis of DGINN pipeline's output.

This repository allow to reproduce the analysis and create figures as in the current publication.

Pipeline for phylogenetic analysis of legionella genes.

Coevolution analysis: Retrieval of orthologs of ComR and RocC in Legionella, alignment and phylogeny.

This repository is a template containing scripts to help you build your own nextflow pipeline.

Functional analysis of RNAseq differential expression analysis, on competence mutants. Use of COG annotation for enrichment analysis in Legionella pneumophila.