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A program and a set of tools for QC and analysis of coding transcripts obtained after parsing of .gff3 and genome .fa files.
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LBMC / Bernard / quantitative nucleosome analysis
CeCILL Free Software License Agreement v2.1Updated -
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RDP / petunia_star_wico_rnaseq
Creative Commons Zero v1.0 UniversalRNA-seq analysis of cell layer-specific expression of gene PhDEF in Petunia petals
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This repository is a template containing scripts to help you build your own nextflow pipeline.
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LBMC / ReGArDS / nextflow
CeCILL Free Software License Agreement v2.1This repository is a template containing scripts to help you build your own nextflow pipeline.
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This repository contains all supplementary data referred to in my PhD manuscript.
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LBMC / oldyvertgroup / lcl
CeCILL Free Software License Agreement v2.1Analysis of cell-cell variability in Lymphoblastoid Cell Lines of the 1000 Genome project
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repo with analyses for the LBMC review article on RAPToR
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nfontrod / lazymodel
CeCILL Free Software License Agreement v2.1Updated -
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LBMC / Delattre / kmerclust
GNU Affero General Public License v3.0Updated -
LBMC / Delattre / JU28_59vs17_SNP
CeCILL Free Software License Agreement v2.1SNP calling pipeline to find homozygote SNPs present in JU2817 strain but not in JU2859
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LBMC / SBDM / idr
GNU Affero General Public License v3.0R package to compute IDR (Irreproductible Discovery Rate)
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