Explore projects
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Functional analysis of RNAseq differential expression analysis, on competence mutants. Use of COG annotation for enrichment analysis in Legionella pneumophila.
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Analysis of a screen for positive selection in the genes of the SARS-CoV-2 interactome.
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LBMC / RMI2 / siDDX42 in A549 and U87-MG cells
CeCILL Free Software License Agreement v2.1This repository allow to reproduce the analysis and create figures as in the current publication.
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nfontrod / Composition Biais Analysis
CeCILL Free Software License Agreement v2.1Analysis of the composition biais within the exons
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nfontrod / lazymodel
CeCILL Free Software License Agreement v2.1Updated -
Pipeline used to run deltaTE analysis
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repo with analyses for the LBMC review article on RAPToR
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Scripts exploring Chimp and Gorilla data with different packages for population genetics (pegas, adegenet, popGenome, etc.)
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Positive selection screen on SARS-CoV-2 interactome: Analysis of DGINN pipeline's output.
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Coevolution analysis: Retrieval of orthologs of ComR and RocC in Legionella, alignment and phylogeny.
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script d'installation des machines virtuelles pour la formation RNAseq du CIRI (2020)
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LBMC / Bernard / quantitative nucleosome analysis
CeCILL Free Software License Agreement v2.1Updated -
LBMC / Hub / formations / scRNA
CeCILL Free Software License Agreement v2.1Formation on scRNA data analysis
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LBMC / RMI2 / RMI2 pipelines
CeCILL Free Software License Agreement v2.1This repository is a template containing scripts to help you build your own nextflow pipeline.
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A program and a set of tools for QC and analysis of coding transcripts obtained after parsing of .gff3 and genome .fa files.
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