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Source code for generating the main figures of the article "Reduction of a sothcastic model of gene expression: Lagrangian dynamics gives acces to basins of attraction as cell types and metastability".

Analysis of Chromosome Conformation Capture data (Hi-C)

Program analyzing QY2H data (.fcs files) and generating affinity ladder. A GUI has been developed for later release in the context of the publication to come.

Create venn diagram from 2 bed files

Analysis of the composition biais within the exons

François Gindraud, a postdoc in the SBDM Team, who has a loot of experience in software development, will be with us for a few months. François, will be able to give a series of small tutorials session on how to write better code.

This repository is a template containing scripts to help you build your own nextflow pipeline.