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This repository is a template containing scripts to help you build your own nextflow pipeline.

Genotypy is a tool to detect genomic barcodes inserted into specific loci from any kind of sequencing data

Scripts for paper Evaluation of genome and base editing tools in maize protoplasts (Fierlej et al, Front. Plant Sci. 2022)

This repository is a template containing scripts to help you build your own nextflow pipeline.

Copie du pipeline de Maxime Lepetit, pour y adapter mon workflow

Source code of the algorithm CARDAMOM developed for inferring GRN from timestamped scRNA-seq data

Visium Analysis Pipeline to process 10x Visium data from pituitary tumors

François Gindraud, a postdoc in the SBDM Team, who has a loot of experience in software development, will be with us for a few months. François, will be able to give a series of small tutorials session on how to write better code.

This repository is a template containing scripts to help you build your own nextflow pipeline.

This project allows to display the size distribution of genomic intervals inside every bed files located in a given directory

Database of public ChIA-PET data to visualise proximal interactions.

Pipeline dedicated to ChIPseq.

This repository is a template containing scripts to help you build your own nextflow pipeline.