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This repository is a template containing scripts to help you build your own nextflow pipeline.

script d'installation des machines virtuelles pour la formation RNAseq du CIRI (2020)

This project aims to create plots that will represent the coverage of transcripts in different conditions

This repository is a template containing scripts to help you build your own nextflow pipeline.

Mapping and variant calling of reads on great ape reference genomes. From Julie Plantade.

This repository is a template containing scripts to help you build your own nextflow pipeline.

script allowing the visualization of the coverage in bigwig files

This repository allow to reproduce the analysis and create figures as in the current publication.

Assembly and variation analysis for Nipah and Ebola viruses for Olivier Reynard

This repository is a template containing scripts to help you build your own nextflow pipeline.

Biosphere environment for UE NGS VM

Gene expression in cells expressing the anti-viral protein ISG20 or not. RNAseq analysis and graphic representations.

documents pour la formation à l'analyse de données RNAseq

Pipeline for phylogenetic analysis of legionella genes.

Script to detect recombination tracts on the output of an analysis of the SNPs from a donor strain on a transformed bacteria. Project from Léo Hardy and Xavier Charpentier