Verified Commit 99c06a7a authored by Laurent Modolo's avatar Laurent Modolo
Browse files

example_marseq.nf: add log for config file

parent 36dac5e3
......@@ -24,11 +24,12 @@ params.whitelist = "data/expected_whitelist.txt"
params.config = "data/marseq_flexi_splitter.yaml"
params.workflow_type = "classic"
log.info "fastq files: ${params.fastq}"
log.info "fasta file : ${params.fasta}"
log.info "gtf file : ${params.gtf}"
log.info "transcript_to_gene file : ${params.transcript_to_gene}"
log.info "whitelist file : ${params.whitelist}"
log.info "fastq files (--fastq): ${params.fastq}"
log.info "fasta file (--fasta): ${params.fasta}"
log.info "gtf file (--gtf): ${params.gtf}"
log.info "transcript_to_gene file (--transcript_to_gene): ${params.transcript_to_gene}"
log.info "whitelist file (--whitelist): ${params.whitelist}"
log.info "config file (--config): ${params.config}"
channel
.fromFilePairs( params.fastq, size: -1)
......
Markdown is supported
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment