Verified Commit 6f67c65c authored by Laurent Modolo's avatar Laurent Modolo
Browse files

bwa: add mapping workflow

parent 94772e16
......@@ -2,6 +2,19 @@ version = "0.7.17"
container_url = "lbmc/bwa:${version}"
workflow mapping {
take:
fasta
fastq
main:
index_fasta(fasta)
mapping_fastq(index_fasta.out.index.collect(), fastq)
emit:
bam: mapping_fastq.out.bam
report: mapping_fastq.out.report
}
params.index_fasta = ""
params.index_fasta_out = ""
process index_fasta {
......
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