Verified Commit 4be336cf authored by Laurent Modolo's avatar Laurent Modolo
Browse files

Merge branch 'master' of gitlab_lbmc:pipelines/nextflow

parents 5c6080a9 4e36c3af
......@@ -76,6 +76,33 @@ for example to run the tests on `Bowtie2` run:
src/nf_modules/Bowtie2/tests/tests.sh
```
## Available tools
| tool | nf module | docker module | sge module |
|------|:---------:|:-------------:|:----------:|
BEDtools | ok | ok | ok
Bowtie2 | ok | ok | ok
FastQC | **no** | ok | ok
HISAT2 | **no** | ok | ok
HTSeq | ok | ok | ok
Kallisto | ok | ok | ok
MultiQC | **no** | ok | ok
RSEM | ok | ok | ok
SAMtools | ok | ok | ok
SRAtoolkit | **no** | ok | ok
Salmon | **no** | ok | ok
TopHat | **no** | ok | ok
Trimmomatic | **no** | ok | ok
UrQt | ok | ok | ok
canu | ok | ok | ok
cutadapt | ok | ok | ok
deepTools | **no** | ok | ok
file_handle | **no** | ok | ok
pigz | **no** | ok | ok
sra-tools | ok | **no** | **no**
## Contributing
Please read [CONTRIBUTING.md](CONTRIBUTING.md) for details on our code of conduct, and the process for submitting pull requests to us.
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