map of pGY694 is not displayed: 500 error.
Something very strange happens for this plasmid: the read view returns a 500 error. This is due to an empty output of blast on dna_features.
If, in app/Http/Controllers/lib/Seq.php
I change
$cmd_blast = "blastn -query "
by
$cmd_blast = "blastn -task blastn -query "
then the map is produced in the read view. However, I then see that maps of many plasmids aren't nice anymore, with lots of small pieces.
Typing blastn -help
in terminal says that blastn
calls the task megablast
by default.