Some changes are not shown.
.reuse/dep5
0 → 100644CHANGELOG
deleted100644 → 0Original line number | Diff line number | Diff line |
---|
CHANGELOG.md
0 → 100644LICENSE
deleted100644 → 0File deleted.
Preview size limit exceeded, changes collapsed.
LICENSES/AGPL-3.0-or-later.txt
0 → 100644File added.
Preview size limit exceeded, changes collapsed.
LICENSES/CC-BY-SA-4.0.txt
0 → 100644bin/.gitignore
0 → 100644doc/building_your_pipeline.md
0 → 100644doc/getting_started.md
0 → 100644doc/img/fork.png
0 → 100644
8.31 KiB
doc/img/fork.png.license
0 → 100644doc/img/merge_request.png
0 → 100644
7.71 KiB
doc/img/merge_request.png.license
0 → 100644doc/img/webide.png
0 → 100644
15.10 KiB
doc/img/webide.png.license
0 → 100644doc/mail.txt
0 → 100644doc/mail.txt.license
0 → 100644doc/nf_projects.md
0 → 100644src/.docker_modules/docker_push.sh
0 → 100755src/.docker_modules/docker_update.sh
0 → 100644File changed and moved.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File changed and moved.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File changed and moved.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
src/.docker_modules/kb/0.26.0/Dockerfile
0 → 100644File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
src/.docker_modules/kb/0.26.0/fix_t2g.py
0 → 100644File added.
Preview size limit exceeded, changes collapsed.
src/.docker_modules/kb/0.26.0/t2g.py
0 → 100755File added.
Preview size limit exceeded, changes collapsed.
src/.docker_modules/kb/0.26.3/Dockerfile
0 → 100644File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
src/.docker_modules/kb/0.26.3/t2g.py
0 → 100755File added.
Preview size limit exceeded, changes collapsed.
src/.docker_modules/last/1060/Dockerfile
0 → 100644File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File changed and moved.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File changed and moved.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File changed and moved.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File changed and moved.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
src/.docker_modules/sanity/Dockerfile
0 → 100644File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File changed and moved.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File changed and moved.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
src/.docker_modules/ucsc/375/Dockerfile
0 → 100644File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
src/.docker_modules/ucsc/400/Dockerfile
0 → 100644File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
src/.docker_modules/ucsc/407/Dockerfile
0 → 100644File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
src/.docker_modules/ucsc/407/gtf2bed.pl
0 → 100644File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File changed and moved.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
src/.singularity_in2p3
0 → 120000File added.
Preview size limit exceeded, changes collapsed.
src/.singularity_psmn
0 → 120000File added.
Preview size limit exceeded, changes collapsed.
src/example_chipseq.nf
0 → 100644File added.
Preview size limit exceeded, changes collapsed.
src/example_marseq.nf
0 → 100644File added.
Preview size limit exceeded, changes collapsed.
src/example_variant_calling.nf
0 → 100644File added.
Preview size limit exceeded, changes collapsed.
src/fasta_sampler.nf
0 → 100644File added.
Preview size limit exceeded, changes collapsed.
src/in2p3.pbs
0 → 100644File added.
Preview size limit exceeded, changes collapsed.
File changed.
Preview size limit exceeded, changes collapsed.
src/nextflow.config
0 → 100644File added.
Preview size limit exceeded, changes collapsed.
src/nf_modules/BEDtools/2.25.0/docker_init.sh
deleted100755 → 0File deleted.
Preview size limit exceeded, changes collapsed.
src/nf_modules/Bowtie2/2.3.4.1/docker_init.sh
deleted100755 → 0File deleted.
Preview size limit exceeded, changes collapsed.
src/nf_modules/Bowtie2/bowtie2.config
deleted100644 → 0File deleted.
Preview size limit exceeded, changes collapsed.
src/nf_modules/Bowtie2/bowtie2.nf
deleted100644 → 0File deleted.
Preview size limit exceeded, changes collapsed.
src/nf_modules/Bowtie2/tests/index.nf
deleted100644 → 0File deleted.
Preview size limit exceeded, changes collapsed.
src/nf_modules/Bowtie2/tests/mapping_paired.nf
deleted100644 → 0File deleted.
Preview size limit exceeded, changes collapsed.
src/nf_modules/Bowtie2/tests/mapping_single.nf
deleted100644 → 0File deleted.
Preview size limit exceeded, changes collapsed.
src/nf_modules/Bowtie2/tests/tests.sh
deleted100755 → 0File deleted.
Preview size limit exceeded, changes collapsed.
src/nf_modules/FastQC/0.11.5/docker_init.sh
deleted100755 → 0File deleted.
Preview size limit exceeded, changes collapsed.
src/nf_modules/HTSeq/0.8.0/docker_init.sh
deleted100755 → 0File deleted.
Preview size limit exceeded, changes collapsed.
src/nf_modules/HTSeq/htseq.config
deleted100644 → 0File deleted.
Preview size limit exceeded, changes collapsed.
src/nf_modules/HTSeq/htseq.nf
deleted100644 → 0File deleted.
Preview size limit exceeded, changes collapsed.
src/nf_modules/HTSeq/tests/counting.nf
deleted100644 → 0File deleted.
Preview size limit exceeded, changes collapsed.
src/nf_modules/HTSeq/tests/tests.sh
deleted100755 → 0File deleted.
Preview size limit exceeded, changes collapsed.
src/nf_modules/Kallisto/0.43.1/docker_init.sh
deleted100755 → 0File deleted.
Preview size limit exceeded, changes collapsed.
src/nf_modules/Kallisto/kallisto.config
deleted100644 → 0File deleted.
Preview size limit exceeded, changes collapsed.
src/nf_modules/Kallisto/kallisto.nf
deleted100644 → 0File deleted.
Preview size limit exceeded, changes collapsed.
src/nf_modules/Kallisto/tests/index.nf
deleted100644 → 0File deleted.
Preview size limit exceeded, changes collapsed.
src/nf_modules/Kallisto/tests/mapping_paired.nf
deleted100644 → 0File deleted.
Preview size limit exceeded, changes collapsed.
src/nf_modules/Kallisto/tests/mapping_single.nf
deleted100644 → 0File deleted.
Preview size limit exceeded, changes collapsed.
src/nf_modules/Kallisto/tests/tests.sh
deleted100755 → 0File deleted.
Preview size limit exceeded, changes collapsed.
src/nf_modules/MultiQC/1.0/docker_init.sh
deleted100755 → 0File deleted.
Preview size limit exceeded, changes collapsed.
src/nf_modules/RSEM/1.3.0/docker_init.sh
deleted100755 → 0File deleted.
Preview size limit exceeded, changes collapsed.
src/nf_modules/RSEM/rsem.config
deleted100644 → 0File deleted.
Preview size limit exceeded, changes collapsed.
src/nf_modules/RSEM/rsem.nf
deleted100644 → 0File deleted.
Preview size limit exceeded, changes collapsed.
src/nf_modules/RSEM/tests/index.nf
deleted100644 → 0File deleted.
Preview size limit exceeded, changes collapsed.
src/nf_modules/RSEM/tests/quantification_paired.nf
deleted100644 → 0File deleted.
Preview size limit exceeded, changes collapsed.
src/nf_modules/RSEM/tests/quantification_single.nf
deleted100644 → 0File deleted.
Preview size limit exceeded, changes collapsed.
src/nf_modules/RSEM/tests/tests.sh
deleted100755 → 0File deleted.
Preview size limit exceeded, changes collapsed.
src/nf_modules/SAMtools/1.7/docker_init.sh
deleted100755 → 0File deleted.
Preview size limit exceeded, changes collapsed.
src/nf_modules/SAMtools/samtools.config
deleted100644 → 0File deleted.
Preview size limit exceeded, changes collapsed.
src/nf_modules/SAMtools/samtools.nf
deleted100644 → 0File deleted.
Preview size limit exceeded, changes collapsed.
src/nf_modules/SAMtools/tests/filter_bams.nf
deleted100644 → 0File deleted.
Preview size limit exceeded, changes collapsed.
src/nf_modules/SAMtools/tests/index_bams.nf
deleted100644 → 0File deleted.
Preview size limit exceeded, changes collapsed.
src/nf_modules/SAMtools/tests/sort_bams.nf
deleted100644 → 0File deleted.
Preview size limit exceeded, changes collapsed.
src/nf_modules/SAMtools/tests/split_bams.nf
deleted100644 → 0File deleted.
Preview size limit exceeded, changes collapsed.
src/nf_modules/SAMtools/tests/tests.sh
deleted100755 → 0File deleted.
Preview size limit exceeded, changes collapsed.
src/nf_modules/SRAtoolkit/2.8.2/docker_init.sh
deleted100755 → 0File deleted.
Preview size limit exceeded, changes collapsed.
src/nf_modules/Salmon/0.8.2/docker_init.sh
deleted100755 → 0File deleted.
Preview size limit exceeded, changes collapsed.
src/nf_modules/TopHat/2.1.1/Dockerfile
deleted100644 → 0File deleted.
Preview size limit exceeded, changes collapsed.
src/nf_modules/TopHat/2.1.1/docker_init.sh
deleted100755 → 0File deleted.
Preview size limit exceeded, changes collapsed.
src/nf_modules/Trimmomatic/0.36/docker_init.sh
deleted100755 → 0File deleted.
Preview size limit exceeded, changes collapsed.
src/nf_modules/UrQt/d62c1f8/docker_init.sh
deleted100755 → 0File deleted.
Preview size limit exceeded, changes collapsed.
src/nf_modules/UrQt/tests/tests.sh
deleted100755 → 0File deleted.
Preview size limit exceeded, changes collapsed.
src/nf_modules/UrQt/tests/trimming_paired.nf
deleted100644 → 0File deleted.
Preview size limit exceeded, changes collapsed.
src/nf_modules/UrQt/tests/trimming_single.nf
deleted100644 → 0File deleted.
Preview size limit exceeded, changes collapsed.
src/nf_modules/UrQt/urqt.config
deleted100644 → 0File deleted.
Preview size limit exceeded, changes collapsed.
src/nf_modules/UrQt/urqt.nf
deleted100644 → 0File deleted.
Preview size limit exceeded, changes collapsed.
src/nf_modules/agat/main.nf
0 → 100644File added.
Preview size limit exceeded, changes collapsed.
src/nf_modules/alntools/main.nf
0 → 100644File added.
Preview size limit exceeded, changes collapsed.
src/nf_modules/beagle/main.nf
0 → 100644File added.
Preview size limit exceeded, changes collapsed.
src/nf_modules/bedtools/main.nf
0 → 100644File added.
Preview size limit exceeded, changes collapsed.
src/nf_modules/bioawk/main.nf
0 → 100644File added.
Preview size limit exceeded, changes collapsed.
src/nf_modules/bioconvert/main.nf
0 → 100644File added.
Preview size limit exceeded, changes collapsed.
src/nf_modules/bowtie/main.nf
0 → 100644File added.
Preview size limit exceeded, changes collapsed.
src/nf_modules/bowtie2/main.nf
0 → 100644File added.
Preview size limit exceeded, changes collapsed.
src/nf_modules/bwa/main.nf
0 → 100644File added.
Preview size limit exceeded, changes collapsed.
src/nf_modules/canu/1.6/docker_init.sh
deleted100755 → 0File deleted.
Preview size limit exceeded, changes collapsed.
src/nf_modules/cellphonedb/main.nf
0 → 100644File added.
Preview size limit exceeded, changes collapsed.
src/nf_modules/cutadapt/1.14/Dockerfile
deleted100644 → 0File deleted.
Preview size limit exceeded, changes collapsed.
src/nf_modules/cutadapt/1.14/docker_init.sh
deleted100755 → 0File deleted.
Preview size limit exceeded, changes collapsed.
src/nf_modules/cutadapt/cutadapt.config
deleted100644 → 0File deleted.
Preview size limit exceeded, changes collapsed.
src/nf_modules/cutadapt/cutadapt.nf
deleted100644 → 0File deleted.
Preview size limit exceeded, changes collapsed.
src/nf_modules/cutadapt/main.nf
0 → 100644File added.
Preview size limit exceeded, changes collapsed.
src/nf_modules/cutadapt/tests/adaptor_removal_paired.nf
deleted100644 → 0File deleted.
Preview size limit exceeded, changes collapsed.
src/nf_modules/cutadapt/tests/adaptor_removal_single.nf
deleted100644 → 0File deleted.
Preview size limit exceeded, changes collapsed.
src/nf_modules/cutadapt/tests/tests.sh
deleted100755 → 0File deleted.
Preview size limit exceeded, changes collapsed.
src/nf_modules/cutadapt/tests/trimming_paired.nf
deleted100644 → 0File deleted.
Preview size limit exceeded, changes collapsed.
src/nf_modules/cutadapt/tests/trimming_single.nf
deleted100644 → 0File deleted.
Preview size limit exceeded, changes collapsed.
src/nf_modules/danpos/main.nf
0 → 100644File added.
Preview size limit exceeded, changes collapsed.
src/nf_modules/deepTools/3.0.2/docker_init.sh
deleted100755 → 0File deleted.
Preview size limit exceeded, changes collapsed.
src/nf_modules/deeptools/main.nf
0 → 100644File added.
Preview size limit exceeded, changes collapsed.
src/nf_modules/emase-zero/main.nf
0 → 100644File added.
Preview size limit exceeded, changes collapsed.
src/nf_modules/emase/main.nf
0 → 100644File added.
Preview size limit exceeded, changes collapsed.
src/nf_modules/fastp/main.nf
0 → 100644File added.
Preview size limit exceeded, changes collapsed.
src/nf_modules/fastq_screen/main.nf
0 → 100644File added.
Preview size limit exceeded, changes collapsed.
src/nf_modules/fastqc/main.nf
0 → 100644File added.
Preview size limit exceeded, changes collapsed.
src/nf_modules/file_handle/0.1.1/docker_init.sh
deleted100755 → 0File deleted.
Preview size limit exceeded, changes collapsed.
src/nf_modules/flexi_splitter/main.nf
0 → 100644File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
src/nf_modules/g2gtools/main.nf
0 → 100644File added.
Preview size limit exceeded, changes collapsed.
src/nf_modules/gatk3/main.nf
0 → 100644File added.
Preview size limit exceeded, changes collapsed.
src/nf_modules/gatk4/main.nf
0 → 100644File added.
Preview size limit exceeded, changes collapsed.
src/nf_modules/gffread/main.nf
0 → 100644File added.
Preview size limit exceeded, changes collapsed.
src/nf_modules/guppy-cpu/main.nf
0 → 100644File added.
Preview size limit exceeded, changes collapsed.
src/nf_modules/guppy-gpu/main.nf
0 → 100644File added.
Preview size limit exceeded, changes collapsed.
src/nf_modules/hisat2/main.nf
0 → 100644File added.
Preview size limit exceeded, changes collapsed.
src/nf_modules/htseq/main.nf
0 → 100644File added.
Preview size limit exceeded, changes collapsed.
src/nf_modules/kallisto/main.nf
0 → 100644File added.
Preview size limit exceeded, changes collapsed.
src/nf_modules/kb/main.nf
0 → 100644File added.
Preview size limit exceeded, changes collapsed.
src/nf_modules/macs2/main.nf
0 → 100644File added.
Preview size limit exceeded, changes collapsed.
src/nf_modules/macs3/main.nf
0 → 100644File added.
Preview size limit exceeded, changes collapsed.
src/nf_modules/minimap2/main.nf
0 → 100644File added.
Preview size limit exceeded, changes collapsed.
src/nf_modules/multiqc/main.nf
0 → 100644File added.
Preview size limit exceeded, changes collapsed.
src/nf_modules/picard/main.nf
0 → 100644File added.
Preview size limit exceeded, changes collapsed.
src/nf_modules/pigz/2.4/docker_init.sh
deleted100755 → 0File deleted.
Preview size limit exceeded, changes collapsed.
src/nf_modules/porechop/main.nf
0 → 100644File added.
Preview size limit exceeded, changes collapsed.
src/nf_modules/rasusa/main.nf
0 → 100644File added.
Preview size limit exceeded, changes collapsed.
src/nf_modules/rasusa/test.nf
0 → 100644File added.
Preview size limit exceeded, changes collapsed.
src/nf_modules/rasusa/test.sh
0 → 100644File added.
Preview size limit exceeded, changes collapsed.
src/nf_modules/salmon/main.nf
0 → 100644File added.
Preview size limit exceeded, changes collapsed.
src/nf_modules/sambamba/main.nf
0 → 100644File added.
Preview size limit exceeded, changes collapsed.
src/nf_modules/samtools/main.nf
0 → 100644File added.
Preview size limit exceeded, changes collapsed.
src/nf_modules/sanity/main.nf
0 → 100644File added.
Preview size limit exceeded, changes collapsed.
src/nf_modules/sratoolkit/list-srr.txt
0 → 100644File added.
Preview size limit exceeded, changes collapsed.
File added.
Preview size limit exceeded, changes collapsed.
src/nf_modules/sratoolkit/main.nf
0 → 100644File added.
Preview size limit exceeded, changes collapsed.
src/nf_modules/star/main.nf
0 → 100644File added.
Preview size limit exceeded, changes collapsed.
src/nf_modules/stringtie2/main.nf
0 → 100644File added.
Preview size limit exceeded, changes collapsed.
src/nf_modules/trinity/main.nf
0 → 100644File added.
Preview size limit exceeded, changes collapsed.
src/nf_modules/ucsc/main.nf
0 → 100644File added.
Preview size limit exceeded, changes collapsed.
src/nf_modules/urqt/main.nf
0 → 100644File added.
Preview size limit exceeded, changes collapsed.
src/nf_test.config
deleted100644 → 0File deleted.
Preview size limit exceeded, changes collapsed.
sge_modules @ 94be868e
File deleted.
Preview size limit exceeded, changes collapsed.
src/solution_RNASeq.nf
0 → 100644File added.
Preview size limit exceeded, changes collapsed.
src/training_dataset.config
0 → 100644File added.
Preview size limit exceeded, changes collapsed.
src/training_dataset.nf
0 → 100644File added.
Preview size limit exceeded, changes collapsed.