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#!/bin/sh #!/bin/sh
# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
#
# SPDX-License-Identifier: AGPL-3.0-or-later
docker pull lbmc/hisat2:2.0.0 docker pull lbmc/hisat2:2.0.0
# docker build src/.docker_modules/hisat2/2.0.0 -t 'lbmc/hisat2:2.0.0' # docker build src/.docker_modules/hisat2/2.0.0 -t 'lbmc/hisat2:2.0.0'
# docker push lbmc/hisat2:2.0.0 # docker push lbmc/hisat2:2.0.0
......
# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
#
# SPDX-License-Identifier: AGPL-3.0-or-later
FROM lbmc/samtools:1.7 FROM lbmc/samtools:1.7
MAINTAINER Nicolas Fontrodona MAINTAINER Nicolas Fontrodona
......
#!/bin/sh #!/bin/sh
# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
#
# SPDX-License-Identifier: AGPL-3.0-or-later
docker pull lbmc/hisat2:2.1.0 docker pull lbmc/hisat2:2.1.0
# docker build src/.docker_modules/hisat2/2.1.0 -t 'lbmc/hisat2:2.1.0' # docker build src/.docker_modules/hisat2/2.1.0 -t 'lbmc/hisat2:2.1.0'
# docker push lbmc/hisat2:2.1.0 # docker push lbmc/hisat2:2.1.0
......
# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
#
# SPDX-License-Identifier: AGPL-3.0-or-later
FROM lbmc/samtools:1.14 as build FROM lbmc/samtools:1.14 as build
ENV HISAT2_VERSION=2.2.1 ENV HISAT2_VERSION=2.2.1
......
#!/bin/sh #!/bin/sh
# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
#
# SPDX-License-Identifier: AGPL-3.0-or-later
docker pull lbmc/hisat2:2.2.1 docker pull lbmc/hisat2:2.2.1
docker build src/.docker_modules/hisat2/2.2.1 -t 'lbmc/hisat2:2.2.1' docker build src/.docker_modules/hisat2/2.2.1 -t 'lbmc/hisat2:2.2.1'
docker push lbmc/hisat2:2.2.1 docker push lbmc/hisat2:2.2.1
......
# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
#
# SPDX-License-Identifier: AGPL-3.0-or-later
FROM ubuntu:18.04 FROM ubuntu:18.04
MAINTAINER Laurent Modolo MAINTAINER Laurent Modolo
......
#!/bin/sh #!/bin/sh
# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
#
# SPDX-License-Identifier: AGPL-3.0-or-later
# docker build src/docker_modules/HTSeq/0.11.2 -t 'htseq:0.11.2' # docker build src/docker_modules/HTSeq/0.11.2 -t 'htseq:0.11.2'
# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
#
# SPDX-License-Identifier: AGPL-3.0-or-later
FROM quay.io/biocontainers/htseq:0.13.5--py39h70b41aa_1 FROM quay.io/biocontainers/htseq:0.13.5--py39h70b41aa_1
MAINTAINER Laurent Modolo MAINTAINER Laurent Modolo
#!/bin/sh #!/bin/sh
# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
#
# SPDX-License-Identifier: AGPL-3.0-or-later
docker pull lbmc/htseq:0.13.5 docker pull lbmc/htseq:0.13.5
docker build src/.docker_modules/htseq/0.13.5 -t 'lbmc/htseq:0.13.5' docker build src/.docker_modules/htseq/0.13.5 -t 'lbmc/htseq:0.13.5'
docker push lbmc/htseq:0.13.5 docker push lbmc/htseq:0.13.5
# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
#
# SPDX-License-Identifier: AGPL-3.0-or-later
FROM ubuntu:18.04 FROM ubuntu:18.04
MAINTAINER Laurent Modolo MAINTAINER Laurent Modolo
......
#!/bin/sh #!/bin/sh
# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
#
# SPDX-License-Identifier: AGPL-3.0-or-later
docker pull lbmc/htseq:0.8.0 docker pull lbmc/htseq:0.8.0
# docker build src/.docker_modules/htseq/0.8.0 -t 'lbmc/htseq:0.8.0' # docker build src/.docker_modules/htseq/0.8.0 -t 'lbmc/htseq:0.8.0'
# docker push lbmc/htseq:0.8.0 # docker push lbmc/htseq:0.8.0
......
# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
#
# SPDX-License-Identifier: AGPL-3.0-or-later
FROM ubuntu:20.04 FROM ubuntu:20.04
RUN apt-get update \ RUN apt-get update \
......
#!/bin/sh #!/bin/sh
# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
#
# SPDX-License-Identifier: AGPL-3.0-or-later
docker pull lbmc/htseq:1.99.2 docker pull lbmc/htseq:1.99.2
docker build src/.docker_modules/htseq/1.99.2 -t 'lbmc/htseq:1.99.2' docker build src/.docker_modules/htseq/1.99.2 -t 'lbmc/htseq:1.99.2'
docker push lbmc/htseq:1.99.2 docker push lbmc/htseq:1.99.2
# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
#
# SPDX-License-Identifier: AGPL-3.0-or-later
FROM ubuntu:18.04 FROM ubuntu:18.04
MAINTAINER Laurent Modolo MAINTAINER Laurent Modolo
......
#!/bin/sh #!/bin/sh
# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
#
# SPDX-License-Identifier: AGPL-3.0-or-later
docker pull lbmc/kallisto:0.43.1 docker pull lbmc/kallisto:0.43.1
# docker build src/.docker_modules/kallisto/0.43.1 -t 'lbmc/kallisto:0.43.1' # docker build src/.docker_modules/kallisto/0.43.1 -t 'lbmc/kallisto:0.43.1'
# docker push lbmc/kallisto:0.43.1 # docker push lbmc/kallisto:0.43.1
......
# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
#
# SPDX-License-Identifier: AGPL-3.0-or-later
FROM ubuntu:18.04 FROM ubuntu:18.04
MAINTAINER Laurent Modolo MAINTAINER Laurent Modolo
......
#!/bin/sh #!/bin/sh
# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
#
# SPDX-License-Identifier: AGPL-3.0-or-later
docker pull lbmc/kallisto:0.44.0 docker pull lbmc/kallisto:0.44.0
# docker build src/.docker_modules/kallisto/0.44.0 -t 'lbmc/kallisto:0.44.0' # docker build src/.docker_modules/kallisto/0.44.0 -t 'lbmc/kallisto:0.44.0'
# docker push lbmc/kallisto:0.44.0 # docker push lbmc/kallisto:0.44.0
......
# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
#
# SPDX-License-Identifier: AGPL-3.0-or-later
FROM python:3.7 FROM python:3.7
MAINTAINER Laurent Modolo MAINTAINER Laurent Modolo
......
#!/bin/sh #!/bin/sh
# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
#
# SPDX-License-Identifier: AGPL-3.0-or-later
docker pull lbmc/kallistobustools:0.24.4 docker pull lbmc/kallistobustools:0.24.4
# docker build src/.docker_modules/kallistobustools/0.24.4 -t 'lbmc/kallistobustools:0.24.4' # docker build src/.docker_modules/kallistobustools/0.24.4 -t 'lbmc/kallistobustools:0.24.4'
# docker push lbmc/kallistobustools:0.24.4 # docker push lbmc/kallistobustools:0.24.4
......
# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
#
# SPDX-License-Identifier: AGPL-3.0-or-later
FROM python:3.8-alpine FROM python:3.8-alpine
MAINTAINER Laurent Modolo MAINTAINER Laurent Modolo
......