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#!/bin/sh #!/bin/sh
# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
#
# SPDX-License-Identifier: AGPL-3.0-or-later
fd "Dockerfile" src/.docker_modules | perl -pe 's|.*docker_modules/(.*)/(.*)/Dockerfile|\1:\2|g' | awk '{system("docker push lbmc/"$0)}' fd "Dockerfile" src/.docker_modules | perl -pe 's|.*docker_modules/(.*)/(.*)/Dockerfile|\1:\2|g' | awk '{system("docker push lbmc/"$0)}'
#!/bin/sh #!/bin/sh
# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
#
# SPDX-License-Identifier: AGPL-3.0-or-later
fd "Dockerfile" src/.docke_modules | perl -pe 's|.*docker_modules/(.*)/(.*)/Dockerfile|\1:\2|g' | awk '{system("docker tag "$0" lbmc/" $0)}' fd "Dockerfile" src/.docke_modules | perl -pe 's|.*docker_modules/(.*)/(.*)/Dockerfile|\1:\2|g' | awk '{system("docker tag "$0" lbmc/" $0)}'
# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
#
# SPDX-License-Identifier: AGPL-3.0-or-later
FROM debian:buster as build FROM debian:buster as build
MAINTAINER Laurent Modolo MAINTAINER Laurent Modolo
......
#!/bin/sh #!/bin/sh
# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
#
# SPDX-License-Identifier: AGPL-3.0-or-later
docker pull lbmc/emase-zero:0.3.1 docker pull lbmc/emase-zero:0.3.1
# docker build src/.docker_modules/emase-zero/0.3.1 -t 'lbmc/emase-zero:0.3.1' # docker build src/.docker_modules/emase-zero/0.3.1 -t 'lbmc/emase-zero:0.3.1'
# docker push lbmc/emase-zero:0.3.1 # docker push lbmc/emase-zero:0.3.1
......
# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
#
# SPDX-License-Identifier: AGPL-3.0-or-later
FROM conda/miniconda2 FROM conda/miniconda2
MAINTAINER Laurent Modolo MAINTAINER Laurent Modolo
......
#!/bin/sh #!/bin/sh
# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
#
# SPDX-License-Identifier: AGPL-3.0-or-later
docker pull lbmc/emase:0.10.16 docker pull lbmc/emase:0.10.16
# docker build src/.docker_modules/emase/0.10.16 -t 'lbmc/emase:0.10.16' # docker build src/.docker_modules/emase/0.10.16 -t 'lbmc/emase:0.10.16'
# docker push lbmc/emase:0.10.16 # docker push lbmc/emase:0.10.16
......
# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
#
# SPDX-License-Identifier: AGPL-3.0-or-later
FROM quay.io/biocontainers/fastp:0.19.7--hdbcaa40_0 FROM quay.io/biocontainers/fastp:0.19.7--hdbcaa40_0
MAINTAINER Laurent Modolo MAINTAINER Laurent Modolo
#!/bin/sh #!/bin/sh
# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
#
# SPDX-License-Identifier: AGPL-3.0-or-later
docker pull lbmc/fastp:0.19.7 docker pull lbmc/fastp:0.19.7
# docker build src/.docker_modules/fastp/0.19.7 -t 'lbmc/fastp:0.19.7' # docker build src/.docker_modules/fastp/0.19.7 -t 'lbmc/fastp:0.19.7'
# docker push lbmc/fastp:0.19.7 # docker push lbmc/fastp:0.19.7
......
# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
#
# SPDX-License-Identifier: AGPL-3.0-or-later
FROM quay.io/biocontainers/fastp:0.20.1--h8b12597_0 FROM quay.io/biocontainers/fastp:0.20.1--h8b12597_0
MAINTAINER Laurent Modolo MAINTAINER Laurent Modolo
#!/bin/sh #!/bin/sh
# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
#
# SPDX-License-Identifier: AGPL-3.0-or-later
docker pull lbmc/fastp:0.20.1 docker pull lbmc/fastp:0.20.1
# docker build src/.docker_modules/fastp/0.20.1 -t 'lbmc/fastp:0.20.1' # docker build src/.docker_modules/fastp/0.20.1 -t 'lbmc/fastp:0.20.1'
# docker push lbmc/fastp:0.20.1 # docker push lbmc/fastp:0.20.1
......
# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
#
# SPDX-License-Identifier: AGPL-3.0-or-later
FROM quay.io/biocontainers/fastp:0.23.2--hb7a2d85_2
MAINTAINER Laurent Modolo
#!/bin/sh
# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
#
# SPDX-License-Identifier: AGPL-3.0-or-later
docker pull lbmc/fastp:0.23.2
# docker build src/.docker_modules/fastp/0.23.2 -t 'lbmc/fastp:0.23.2'
docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/fastp:0.23.2" --push src/.docker_modules/fastp/0.23.2
docker push lbmc/fastp:0.23.2
# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
#
# SPDX-License-Identifier: AGPL-3.0-or-later
FROM ubuntu:18.04 FROM ubuntu:18.04
MAINTAINER Laurent Modolo MAINTAINER Laurent Modolo
......
#!/bin/sh #!/bin/sh
# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
#
# SPDX-License-Identifier: AGPL-3.0-or-later
docker pull lbmc/fastqc:0.11.5 docker pull lbmc/fastqc:0.11.5
# docker build src/.docker_modules/fastqc/0.11.5 -t 'lbmc/fastqc:0.11.5' # docker build src/.docker_modules/fastqc/0.11.5 -t 'lbmc/fastqc:0.11.5'
# docker push lbmc/fastqc:0.11.5 # docker push lbmc/fastqc:0.11.5
......
# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
#
# SPDX-License-Identifier: AGPL-3.0-or-later
FROM ubuntu:18.04 FROM ubuntu:18.04
MAINTAINER Laurent Modolo MAINTAINER Laurent Modolo
......
#!/bin/sh #!/bin/sh
# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
#
# SPDX-License-Identifier: AGPL-3.0-or-later
docker pull lbmc/file_handle:0.1.1 docker pull lbmc/file_handle:0.1.1
# docker build src/.docker_modules/file_handle/0.1.1 -t 'lbmc/file_handle:0.1.1' # docker build src/.docker_modules/file_handle/0.1.1 -t 'lbmc/file_handle:0.1.1'
# docker push lbmc/file_handle:0.1.1 # docker push lbmc/file_handle:0.1.1
......
# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
#
# SPDX-License-Identifier: AGPL-3.0-or-later
FROM python:3.9-slim FROM python:3.9-slim
MAINTAINER Lauret Modolo MAINTAINER Lauret Modolo
......
#!/bin/sh #!/bin/sh
# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
#
# SPDX-License-Identifier: AGPL-3.0-or-later
docker pull lbmc/flexi_splitter:1.0.2 docker pull lbmc/flexi_splitter:1.0.2
# docker build src/.docker_modules/flexi_splitter/1.0.2 -t 'lbmc/flexi_splitter:1.0.2' # docker build src/.docker_modules/flexi_splitter/1.0.2 -t 'lbmc/flexi_splitter:1.0.2'
# docker push lbmc/flexi_splitter:1.0.2 # docker push lbmc/flexi_splitter:1.0.2
......
# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
#
# SPDX-License-Identifier: AGPL-3.0-or-later
FROM quay.io/biocontainers/freebayes:1.3.2--py36h89e4507_1 FROM quay.io/biocontainers/freebayes:1.3.2--py36h89e4507_1
MAINTAINER Laurent Modolo MAINTAINER Laurent Modolo
#!/bin/sh #!/bin/sh
# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
#
# SPDX-License-Identifier: AGPL-3.0-or-later
docker pull lbmc/freebayes:1.3.2 docker pull lbmc/freebayes:1.3.2
# docker build src/.docker_modules/freebayes/1.3.2/ -t 'lbmc/freebayes:1.3.2' # docker build src/.docker_modules/freebayes/1.3.2/ -t 'lbmc/freebayes:1.3.2'
# docker push lbmc/freebayes:1.3.2 # docker push lbmc/freebayes:1.3.2
......