src/.docker_modules/sanity/docker_init.sh

 #!/bin/sh
+
+# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
+#
+# SPDX-License-Identifier: AGPL-3.0-or-later
+
 docker pull mlepetit/sanity
 docker build src/.docker_modules/sanity -t 'lbmc/sanity'
 docker push lbmc/sanity

src/.docker_modules/seqkit/2.1.0/Dockerfile

+# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
+#
+# SPDX-License-Identifier: AGPL-3.0-or-later
+
 FROM ubuntu:16.04
 
 #Begin: install prerequisites

src/.docker_modules/seqkit/2.1.0/docker_init.sh

 #!/bin/sh
+
+# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
+#
+# SPDX-License-Identifier: AGPL-3.0-or-later
+
 docker pull lbmc/seqkit:2.1.0
 docker build src/.docker_modules/seqkit/2.1.0 -t 'lbmc/seqkit:2.1.0'
 docker push lbmc/seqkit:2.1.0

src/.docker_modules/sratoolkit/2.8.2/Dockerfile

+# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
+#
+# SPDX-License-Identifier: AGPL-3.0-or-later
+
 FROM ubuntu:18.04
 MAINTAINER Laurent Modolo
 

src/.docker_modules/sratoolkit/2.8.2/docker_init.sh

 #!/bin/sh
+
+# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
+#
+# SPDX-License-Identifier: AGPL-3.0-or-later
+
 docker pull lbmc/sratoolkit:2.8.2
 # docker build src/.docker_modules/sratoolkit/2.8.2 -t 'lbmc/sratoolkit:2.8.2'
 # docker push lbmc/sratoolkit:2.8.2

src/.docker_modules/sratoolkit/3.0.0/Dockerfile

+# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
+#
+# SPDX-License-Identifier: AGPL-3.0-or-later
+
+FROM ncbi/sra-tools:3.0.0
+
+ENV SRATOOLKIT_VERSION=3.0.0
+ENV PACKAGES bash 
+
+RUN apk add ${PACKAGES}

src/.docker_modules/sratoolkit/3.0.0/docker_init.sh

+#!/bin/sh
+
+# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
+#
+# SPDX-License-Identifier: AGPL-3.0-or-later
+
+docker pull lbmc/sratoolkit:3.0.0
+# docker build src/.docker_modules/sratoolkit/3.0.0 -t 'lbmc/sratoolkit:3.0.0'
+# docker push lbmc/sratoolkit:3.0.0
+docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/sratoolkit:3.0.0" --push src/.docker_modules/sratoolkit/3.0.0

src/.docker_modules/star/2.5.3/Dockerfile

+# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
+#
+# SPDX-License-Identifier: AGPL-3.0-or-later
+
 FROM quay.io/biocontainers/star:2.7.3a--0
 MAINTAINER Laurent Modolo

src/.docker_modules/star/2.5.3/docker_init.sh

 #!/bin/sh
+
+# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
+#
+# SPDX-License-Identifier: AGPL-3.0-or-later
+
 docker pull lbmc/star:2.7.3a
 # docker build src/.docker_modules/star/2.7.3a/ -t 'lbmc/star:2.7.3a'
 # docker push lbmc/star:2.7.3a

src/.docker_modules/star/2.7.3a/Dockerfile

+# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
+#
+# SPDX-License-Identifier: AGPL-3.0-or-later
+
 FROM quay.io/biocontainers/star:2.7.3a--0
 MAINTAINER Laurent Modolo

src/.docker_modules/star/2.7.3a/docker_init.sh

 #!/bin/sh
+
+# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
+#
+# SPDX-License-Identifier: AGPL-3.0-or-later
+
 docker pull lbmc/star:2.7.3a
 # docker build src/.docker_modules/star/2.7.3a/ -t 'lbmc/star:2.7.3a'
 # docker push lbmc/star:2.7.3a

src/.docker_modules/stringtie/2.1.1/Dockerfile

+# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
+#
+# SPDX-License-Identifier: AGPL-3.0-or-later
+
 FROM ubuntu:16.04
 Maintainer Chen Yuelong <yuelong.chen.btr@gmail.com>
 

src/.docker_modules/stringtie/2.1.1/docker_init.sh

 #!/bin/sh
+
+# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
+#
+# SPDX-License-Identifier: AGPL-3.0-or-later
+
 docker pull lbmc/stringtie:2.1.1
 docker build src/.docker_modules/stringtie/2.1.1 -t 'lbmc/stringtie:2.1.1'
 docker push lbmc/stringtie:2.1.1

src/.docker_modules/subread/1.6.4/Dockerfile

+# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
+#
+# SPDX-License-Identifier: AGPL-3.0-or-later
+
 FROM quay.io/biocontainers/subread:1.6.4--h84994c4_1
 MAINTAINER Laurent Modolo

src/.docker_modules/subread/1.6.4/docker_init.sh

 #!/bin/sh
+
+# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
+#
+# SPDX-License-Identifier: AGPL-3.0-or-later
+
 docker pull lbmc/subread:1.6.4
 # docker build src/.docker_modules/subread/1.6.4 -t 'lbmc/subread:1.6.4'
 # docker push lbmc/subread:1.6.4

src/.docker_modules/tinycov/0.3.1/Dockerfile

+# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
+#
+# SPDX-License-Identifier: AGPL-3.0-or-later
+
+FROM python:3.9-slim
+MAINTAINER Laurent Modolo
+
+ENV TINYCOV_VERSION=0.3.1
+
+RUN apt update \
+ && apt install -y  procps \
+ && pip install tinycov==$TINYCOV_VERSION 
+
+
+CMD ["bash"]

src/.docker_modules/tinycov/0.3.1/docker_init.sh

+#!/bin/sh
+
+# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
+#
+# SPDX-License-Identifier: AGPL-3.0-or-later
+
+docker pull lbmc/tinycov:0.3.1
+docker build src/.docker_modules/tinycov/0.3.1 -t 'lbmc/tinycov:0.3.1'
+docker push lbmc/tinycov:0.3.1
+docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/tinycov:0.3.1" --push src/.docker_modules/tinycov/0.3.1

src/.docker_modules/tophat/2.1.1/Dockerfile

+# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
+#
+# SPDX-License-Identifier: AGPL-3.0-or-later
+
 FROM ubuntu:18.04
 MAINTAINER Laurent Modolo
 

src/.docker_modules/tophat/2.1.1/docker_init.sh

 #!/bin/sh
+
+# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
+#
+# SPDX-License-Identifier: AGPL-3.0-or-later
+
 docker pull lbmc/tophat:2.1.1
 # docker build src/.docker_modules/tophat/2.1.1 -t 'lbmc/tophat:2.1.1'
 # docker push lbmc/tophat:2.1.1

src/.docker_modules/trimmomatic/0.36/Dockerfile

+# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
+#
+# SPDX-License-Identifier: AGPL-3.0-or-later
+
 FROM ubuntu:18.04
 MAINTAINER Laurent Modolo