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--- a/src/.docker_modules/umi_tools/1.0.0/docker_init.sh
+++ b/src/.docker_modules/umi_tools/1.0.0/docker_init.sh
--- a/src/nf_modules/UrQt/d62c1f8/Dockerfile
+++ b/src/nf_modules/UrQt/d62c1f8/Dockerfile
--- a/src/.docker_modules/urqt/d62c1f8/docker_init.sh
+++ b/src/.docker_modules/urqt/d62c1f8/docker_init.sh
--- a/src/.singularity_in2p3
+++ b/src/.singularity_in2p3
--- a/src/.singularity_psmn
+++ b/src/.singularity_psmn
--- a/src/example_chipseq.nf
+++ b/src/example_chipseq.nf
--- a/src/example_marseq.nf
+++ b/src/example_marseq.nf
--- a/src/example_variant_calling.nf
+++ b/src/example_variant_calling.nf
--- a/src/fasta_sampler.nf
+++ b/src/fasta_sampler.nf
--- a/src/in2p3.pbs
+++ b/src/in2p3.pbs
--- a/src/install_nextflow.sh
+++ b/src/install_nextflow.sh
--- a/src/nextflow.config
+++ b/src/nextflow.config
--- a/src/nf_modules/BEDtools/2.25.0/docker_init.sh
+++ b/src/nf_modules/BEDtools/2.25.0/docker_init.sh
--- a/src/nf_modules/Bowtie2/2.3.4.1/docker_init.sh
+++ b/src/nf_modules/Bowtie2/2.3.4.1/docker_init.sh
--- a/src/nf_modules/Bowtie2/bowtie2.config
+++ b/src/nf_modules/Bowtie2/bowtie2.config
--- a/src/nf_modules/Bowtie2/bowtie2.nf
+++ b/src/nf_modules/Bowtie2/bowtie2.nf
--- a/src/nf_modules/Bowtie2/tests/index.nf
+++ b/src/nf_modules/Bowtie2/tests/index.nf
--- a/src/nf_modules/Bowtie2/tests/mapping_paired.nf
+++ b/src/nf_modules/Bowtie2/tests/mapping_paired.nf
--- a/src/nf_modules/Bowtie2/tests/mapping_single.nf
+++ b/src/nf_modules/Bowtie2/tests/mapping_single.nf
--- a/src/nf_modules/Bowtie2/tests/tests.sh
+++ b/src/nf_modules/Bowtie2/tests/tests.sh
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