src/.docker_modules/hicstuff/3.1.3/docker_init.sh

+#!/bin/sh
+
+# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
+#
+# SPDX-License-Identifier: AGPL-3.0-or-later
+
+docker pull lbmc/hicstuff:3.1.3
+docker build src/.docker_modules/hicstuff/3.1.3/ -t 'lbmc/hicstuff:3.1.3'
+docker push lbmc/hicstuff:3.1.3
+#docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/hicstuff:3.1.3" --push src/.docker_modules/hicstuff/3.1.3/

hicstuff @ c3d488f8

+Subproject commit c3d488f8012ed5296431ebf299a97f78d0b03407

src/.docker_modules/hisat2/2.0.0/Dockerfile

+# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
+#
+# SPDX-License-Identifier: AGPL-3.0-or-later
+
 FROM lbmc/samtools:1.7
 MAINTAINER Nicolas Fontrodona
 

src/.docker_modules/hisat2/2.0.0/docker_init.sh

 #!/bin/sh
+
+# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
+#
+# SPDX-License-Identifier: AGPL-3.0-or-later
+
 docker pull lbmc/hisat2:2.0.0
-docker build src/.docker_modules/hisat2/2.0.0 -t 'lbmc/hisat2:2.0.0'
-docker push lbmc/hisat2:2.0.0
+# docker build src/.docker_modules/hisat2/2.0.0 -t 'lbmc/hisat2:2.0.0'
+# docker push lbmc/hisat2:2.0.0
+docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/hisat2:2.0.0" --push src/.docker_modules/hisat2/2.0.0

src/.docker_modules/hisat2/2.1.0/Dockerfile

+# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
+#
+# SPDX-License-Identifier: AGPL-3.0-or-later
+
 FROM lbmc/samtools:1.7
 MAINTAINER Nicolas Fontrodona
 

src/.docker_modules/hisat2/2.1.0/docker_init.sh

 #!/bin/sh
+
+# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
+#
+# SPDX-License-Identifier: AGPL-3.0-or-later
+
 docker pull lbmc/hisat2:2.1.0
-docker build src/.docker_modules/hisat2/2.1.0 -t 'lbmc/hisat2:2.1.0'
-docker push lbmc/hisat2:2.1.0
+# docker build src/.docker_modules/hisat2/2.1.0 -t 'lbmc/hisat2:2.1.0'
+# docker push lbmc/hisat2:2.1.0
+docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/hisat2:2.1.0" --push src/.docker_modules/hisat2/2.1.0

src/.docker_modules/hisat2/2.2.1/Dockerfile

+# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
+#
+# SPDX-License-Identifier: AGPL-3.0-or-later
+
+FROM lbmc/samtools:1.14 as build
+
+ENV HISAT2_VERSION=2.2.1
+
+FROM quay.io/biocontainers/hisat2:2.2.1--h1b792b2_3
+COPY --from=build \
+    /usr/local/bin/samtools /usr/local/bin/
+COPY --from=build \
+    /usr/local/bin/../lib/libhts.so.3 \
+    /usr/local/lib/libtinfow.so.6 \
+    /usr/local/lib/libncursesw.so.6 \
+    /usr/local/lib/libz.so.1 \
+    /usr/local/lib/libdeflate.so.0 \
+    /usr/local/lib/liblzma.so.5 \
+    /usr/local/lib/libbz2.so.1.0 /usr/local/lib/
+COPY --from=build \
+    /lib/x86_64-linux-gnu/libm.so.6 \
+    /lib/x86_64-linux-gnu/libpthread.so.0 \
+    /lib/x86_64-linux-gnu/libc.so.6 \
+    /lib/x86_64-linux-gnu/libdl.so.2 \
+    /lib/x86_64-linux-gnu/librt.so.1 /lib/x86_64-linux-gnu/
+COPY --from=build \
+    /lib64/ld-linux-x86-64.so.2 /lib64/
\ No newline at end of file

src/.docker_modules/hisat2/2.2.1/docker_init.sh

+#!/bin/sh
+
+# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
+#
+# SPDX-License-Identifier: AGPL-3.0-or-later
+
+docker pull lbmc/hisat2:2.2.1
+docker build src/.docker_modules/hisat2/2.2.1 -t 'lbmc/hisat2:2.2.1'
+docker push lbmc/hisat2:2.2.1
+docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/hisat2:2.2.1" --push src/.docker_modules/hisat2/2.2.1

src/.docker_modules/htseq/0.11.2/Dockerfile

+# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
+#
+# SPDX-License-Identifier: AGPL-3.0-or-later
+
 FROM ubuntu:18.04
 MAINTAINER Laurent Modolo
 

src/.docker_modules/htseq/0.11.2/docker_init.sh

 #!/bin/sh
-docker build src/docker_modules/HTSeq/0.11.2 -t 'htseq:0.11.2'
+
+# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
+#
+# SPDX-License-Identifier: AGPL-3.0-or-later
+
+# docker build src/docker_modules/HTSeq/0.11.2 -t 'htseq:0.11.2'

src/.docker_modules/htseq/0.13.5/Dockerfile

+# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
+#
+# SPDX-License-Identifier: AGPL-3.0-or-later
+
+FROM quay.io/biocontainers/htseq:0.13.5--py39h70b41aa_1
+MAINTAINER Laurent Modolo

src/.docker_modules/htseq/0.13.5/docker_init.sh

+#!/bin/sh
+
+# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
+#
+# SPDX-License-Identifier: AGPL-3.0-or-later
+
+docker pull lbmc/htseq:0.13.5
+docker build src/.docker_modules/htseq/0.13.5 -t 'lbmc/htseq:0.13.5'
+docker push lbmc/htseq:0.13.5

src/.docker_modules/htseq/0.8.0/Dockerfile

+# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
+#
+# SPDX-License-Identifier: AGPL-3.0-or-later
 
 FROM ubuntu:18.04
 MAINTAINER Laurent Modolo

src/.docker_modules/htseq/0.8.0/docker_init.sh

 #!/bin/sh
+
+# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
+#
+# SPDX-License-Identifier: AGPL-3.0-or-later
+
 docker pull lbmc/htseq:0.8.0
-docker build src/.docker_modules/htseq/0.8.0 -t 'lbmc/htseq:0.8.0'
-docker push lbmc/htseq:0.8.0
+# docker build src/.docker_modules/htseq/0.8.0 -t 'lbmc/htseq:0.8.0'
+# docker push lbmc/htseq:0.8.0
+docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/htseq:0.8.0" --push src/.docker_modules/htseq/0.8.0

src/.docker_modules/htseq/1.99.2/Dockerfile

+# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
+#
+# SPDX-License-Identifier: AGPL-3.0-or-later
+
+FROM ubuntu:20.04
+
+RUN apt-get update \
+    && apt-get install -y \
+     procps \
+     build-essential \
+     python3 \
+     python3-pip
+
+RUN pip install HTSeq==1.99.2

src/.docker_modules/htseq/1.99.2/docker_init.sh

+#!/bin/sh
+
+# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
+#
+# SPDX-License-Identifier: AGPL-3.0-or-later
+
+docker pull lbmc/htseq:1.99.2
+docker build src/.docker_modules/htseq/1.99.2 -t 'lbmc/htseq:1.99.2'
+docker push lbmc/htseq:1.99.2

src/.docker_modules/kallisto/0.43.1/Dockerfile

+# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
+#
+# SPDX-License-Identifier: AGPL-3.0-or-later
+
 FROM ubuntu:18.04
 MAINTAINER Laurent Modolo
 

src/.docker_modules/kallisto/0.43.1/docker_init.sh

 #!/bin/sh
+
+# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
+#
+# SPDX-License-Identifier: AGPL-3.0-or-later
+
 docker pull lbmc/kallisto:0.43.1
-docker build src/.docker_modules/kallisto/0.43.1 -t 'lbmc/kallisto:0.43.1'
-docker push lbmc/kallisto:0.43.1
+# docker build src/.docker_modules/kallisto/0.43.1 -t 'lbmc/kallisto:0.43.1'
+# docker push lbmc/kallisto:0.43.1
+docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/kallisto:0.43.1" --push src/.docker_modules/kallisto/0.43.1

src/.docker_modules/kallisto/0.44.0/Dockerfile

+# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
+#
+# SPDX-License-Identifier: AGPL-3.0-or-later
+
 FROM ubuntu:18.04
 MAINTAINER Laurent Modolo
 

src/.docker_modules/kallisto/0.44.0/docker_init.sh

 #!/bin/sh
+
+# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
+#
+# SPDX-License-Identifier: AGPL-3.0-or-later
+
 docker pull lbmc/kallisto:0.44.0
-docker build src/.docker_modules/kallisto/0.44.0 -t 'lbmc/kallisto:0.44.0'
-docker push lbmc/kallisto:0.44.0
+# docker build src/.docker_modules/kallisto/0.44.0 -t 'lbmc/kallisto:0.44.0'
+# docker push lbmc/kallisto:0.44.0
+docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/kallisto:0.44.0" --push src/.docker_modules/kallisto/0.44.0