src/.docker_modules/deeptools/3.5.0/docker_init.sh

 #!/bin/sh
+
+# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
+#
+# SPDX-License-Identifier: AGPL-3.0-or-later
+
 docker pull lbmc/deeptools:3.5.0
-docker build src/.docker_modules/deeptools/3.5.0 -t 'lbmc/deeptools:3.5.0'
-docker push lbmc/deeptools:3.5.0
+# docker build src/.docker_modules/deeptools/3.5.0 -t 'lbmc/deeptools:3.5.0'
+# docker push lbmc/deeptools:3.5.0
+docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/deeptools:3.5.0" --push src/.docker_modules/deeptools/3.5.0

src/.docker_modules/deeptools/3.5.1/Dockerfile

+# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
+#
+# SPDX-License-Identifier: AGPL-3.0-or-later
+
 FROM python:3.8-slim
 MAINTAINER Lauret Modolo
 

src/.docker_modules/deeptools/3.5.1/docker_init.sh

 #!/bin/sh
+
+# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
+#
+# SPDX-License-Identifier: AGPL-3.0-or-later
+
 docker pull lbmc/deeptools:3.5.1
-docker build src/.docker_modules/deeptools/3.5.1 -t 'lbmc/deeptools:3.5.1'
-docker push lbmc/deeptools:3.5.1
+# docker build src/.docker_modules/deeptools/3.5.1 -t 'lbmc/deeptools:3.5.1'
+# docker push lbmc/deeptools:3.5.1
+docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/deeptools:3.5.1" --push src/.docker_modules/deeptools/3.5.1

src/.docker_modules/docker_push.sh

 #!/bin/sh
+
+# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
+#
+# SPDX-License-Identifier: AGPL-3.0-or-later
+
 fd "Dockerfile" src/.docker_modules | perl -pe 's|.*docker_modules/(.*)/(.*)/Dockerfile|\1:\2|g' | awk '{system("docker push lbmc/"$0)}'

src/.docker_modules/docker_update.sh

 #!/bin/sh
+
+# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
+#
+# SPDX-License-Identifier: AGPL-3.0-or-later
+
 fd "Dockerfile" src/.docke_modules | perl -pe 's|.*docker_modules/(.*)/(.*)/Dockerfile|\1:\2|g' | awk '{system("docker tag "$0" lbmc/" $0)}'

src/.docker_modules/emase-zero/0.3.1/Dockerfile

+# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
+#
+# SPDX-License-Identifier: AGPL-3.0-or-later
+
 FROM debian:buster as build
 MAINTAINER Laurent Modolo
 

src/.docker_modules/emase-zero/0.3.1/docker_init.sh

 #!/bin/sh
+
+# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
+#
+# SPDX-License-Identifier: AGPL-3.0-or-later
+
 docker pull lbmc/emase-zero:0.3.1
-docker build src/.docker_modules/emase-zero/0.3.1 -t 'lbmc/emase-zero:0.3.1'
-docker push lbmc/emase-zero:0.3.1
+# docker build src/.docker_modules/emase-zero/0.3.1 -t 'lbmc/emase-zero:0.3.1'
+# docker push lbmc/emase-zero:0.3.1
+docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/emase-zero:0.3.1" --push src/.docker_modules/emase-zero/0.3.1

src/.docker_modules/emase/0.10.16/Dockerfile

-FROM python:2.7
+# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
+#
+# SPDX-License-Identifier: AGPL-3.0-or-later
+
+FROM conda/miniconda2
 MAINTAINER Laurent Modolo
 
 ENV EMASE_VERSION=0.10.16
+RUN conda init \
+&& conda config --add channels r \
+&& conda config --add channels bioconda \
+&& conda create -y -n emase jupyter
+SHELL ["conda", "run", "-n", "emase", "/bin/bash", "-c"]
+RUN conda install -y -c kbchoi emase \
+&& echo "conda activate emase" >> /root/.bashrc
+RUN apt update && apt install -y procps
 
-RUN apt-get update \
-    && apt-get install -y python-h5py \
-    && pip install numpy==1.8.2 \
-    && pip install numexpr==2.3.1 \
-    && pip install cython>=0.13 \
-    && pip install tables==3.1.0 \
-    && pip install emase==${EMASE_VERSION}
-
-CMD ["bash"]
-
+ENV PATH /usr/local/envs/emase/bin:/usr/local/condabin:$PATH

src/.docker_modules/emase/0.10.16/docker_init.sh

 #!/bin/sh
+
+# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
+#
+# SPDX-License-Identifier: AGPL-3.0-or-later
+
 docker pull lbmc/emase:0.10.16
-docker build src/.docker_modules/emase/0.10.16 -t 'lbmc/emase:0.10.16'
-docker push lbmc/emase:0.10.16
+# docker build src/.docker_modules/emase/0.10.16 -t 'lbmc/emase:0.10.16'
+# docker push lbmc/emase:0.10.16
+docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/emase:0.10.16" --push src/.docker_modules/emase/0.10.16

src/.docker_modules/fastp/0.19.7/Dockerfile

+# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
+#
+# SPDX-License-Identifier: AGPL-3.0-or-later
+
 FROM quay.io/biocontainers/fastp:0.19.7--hdbcaa40_0
 MAINTAINER Laurent Modolo

src/.docker_modules/fastp/0.19.7/docker_init.sh

 #!/bin/sh
+
+# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
+#
+# SPDX-License-Identifier: AGPL-3.0-or-later
+
 docker pull lbmc/fastp:0.19.7
-docker build src/.docker_modules/fastp/0.19.7 -t 'lbmc/fastp:0.19.7'
-docker push lbmc/fastp:0.19.7
+# docker build src/.docker_modules/fastp/0.19.7 -t 'lbmc/fastp:0.19.7'
+# docker push lbmc/fastp:0.19.7
+docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/fastp:0.19.7" --push src/.docker_modules/fastp/0.19.7

src/.docker_modules/fastp/0.20.1/Dockerfile

+# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
+#
+# SPDX-License-Identifier: AGPL-3.0-or-later
+
 FROM quay.io/biocontainers/fastp:0.20.1--h8b12597_0
 MAINTAINER Laurent Modolo

src/.docker_modules/fastp/0.20.1/docker_init.sh

 #!/bin/sh
+
+# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
+#
+# SPDX-License-Identifier: AGPL-3.0-or-later
+
 docker pull lbmc/fastp:0.20.1
-docker build src/.docker_modules/fastp/0.20.1 -t 'lbmc/fastp:0.20.1'
-docker push lbmc/fastp:0.20.1
+# docker build src/.docker_modules/fastp/0.20.1 -t 'lbmc/fastp:0.20.1'
+# docker push lbmc/fastp:0.20.1
+docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/fastp:0.20.1" --push src/.docker_modules/fastp/0.20.1

src/.docker_modules/fastp/0.23.2/Dockerfile

+# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
+#
+# SPDX-License-Identifier: AGPL-3.0-or-later
+
+FROM quay.io/biocontainers/fastp:0.23.2--hb7a2d85_2
+MAINTAINER Laurent Modolo

src/.docker_modules/fastp/0.23.2/docker_init.sh

+#!/bin/sh
+
+# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
+#
+# SPDX-License-Identifier: AGPL-3.0-or-later
+
+docker pull lbmc/fastp:0.23.2
+# docker build src/.docker_modules/fastp/0.23.2 -t 'lbmc/fastp:0.23.2'
+docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/fastp:0.23.2" --push src/.docker_modules/fastp/0.23.2
+docker push lbmc/fastp:0.23.2

src/.docker_modules/fastqc/0.11.5/Dockerfile

+# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
+#
+# SPDX-License-Identifier: AGPL-3.0-or-later
+
 FROM ubuntu:18.04
 MAINTAINER Laurent Modolo
 

src/.docker_modules/fastqc/0.11.5/docker_init.sh

 #!/bin/sh
+
+# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
+#
+# SPDX-License-Identifier: AGPL-3.0-or-later
+
 docker pull lbmc/fastqc:0.11.5
-docker build src/.docker_modules/fastqc/0.11.5 -t 'lbmc/fastqc:0.11.5'
-docker push lbmc/fastqc:0.11.5
+# docker build src/.docker_modules/fastqc/0.11.5 -t 'lbmc/fastqc:0.11.5'
+# docker push lbmc/fastqc:0.11.5
+docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/fastqc:0.11.5" --push src/.docker_modules/fastqc/0.11.5

src/.docker_modules/file_handle/0.1.1/Dockerfile

+# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
+#
+# SPDX-License-Identifier: AGPL-3.0-or-later
+
 FROM ubuntu:18.04
 MAINTAINER Laurent Modolo
 

src/.docker_modules/file_handle/0.1.1/docker_init.sh

 #!/bin/sh
+
+# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
+#
+# SPDX-License-Identifier: AGPL-3.0-or-later
+
 docker pull lbmc/file_handle:0.1.1
-docker build src/.docker_modules/file_handle/0.1.1 -t 'lbmc/file_handle:0.1.1'
-docker push lbmc/file_handle:0.1.1
+# docker build src/.docker_modules/file_handle/0.1.1 -t 'lbmc/file_handle:0.1.1'
+# docker push lbmc/file_handle:0.1.1
+docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/file_handle:0.1.1" --push src/.docker_modules/file_handle/0.1.1

src/.docker_modules/flexi_splitter/1.0.2/Dockerfile

+# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
+#
+# SPDX-License-Identifier: AGPL-3.0-or-later
+
 FROM python:3.9-slim
 MAINTAINER Lauret Modolo