Compare revisions

705226a9 · 705226a9 · 705226a9 · 705226a9 · 705226a9 · 705226a9
--- a/src/nf_modules/SAMtools/tests/index_bams.nf
+++ b/src/nf_modules/SAMtools/tests/index_bams.nf
--- a/src/nf_modules/SAMtools/tests/sort_bams.nf
+++ b/src/nf_modules/SAMtools/tests/sort_bams.nf
--- a/src/nf_modules/SAMtools/tests/split_bams.nf
+++ b/src/nf_modules/SAMtools/tests/split_bams.nf
--- a/src/nf_modules/UrQt/tests/trimming_paired.nf
+++ b/src/nf_modules/UrQt/tests/trimming_paired.nf
--- a/src/nf_modules/UrQt/tests/trimming_single.nf
+++ b/src/nf_modules/UrQt/tests/trimming_single.nf
--- a/src/nf_modules/UrQt/urqt.config
+++ b/src/nf_modules/UrQt/urqt.config
--- a/src/nf_modules/UrQt/urqt.nf
+++ b/src/nf_modules/UrQt/urqt.nf
--- a/src/nf_modules/agat/main.nf
+++ b/src/nf_modules/agat/main.nf
--- a/src/nf_modules/alntools/main.nf
+++ b/src/nf_modules/alntools/main.nf
--- a/src/nf_modules/beagle/main.nf
+++ b/src/nf_modules/beagle/main.nf
--- a/src/nf_modules/bedtools/main.nf
+++ b/src/nf_modules/bedtools/main.nf
--- a/src/nf_modules/bioawk/main.nf
+++ b/src/nf_modules/bioawk/main.nf
--- a/src/nf_modules/bioconvert/main.nf
+++ b/src/nf_modules/bioconvert/main.nf
--- a/src/nf_modules/bowtie/main.nf
+++ b/src/nf_modules/bowtie/main.nf
--- a/src/nf_modules/bowtie2/main.nf
+++ b/src/nf_modules/bowtie2/main.nf
--- a/src/nf_modules/bwa/main.nf
+++ b/src/nf_modules/bwa/main.nf
--- a/src/nf_modules/cellphonedb/main.nf
+++ b/src/nf_modules/cellphonedb/main.nf
--- a/src/nf_modules/cutadapt/cutadapt.config
+++ b/src/nf_modules/cutadapt/cutadapt.config
--- a/src/nf_modules/cutadapt/cutadapt.nf
+++ b/src/nf_modules/cutadapt/cutadapt.nf
--- a/src/nf_modules/cutadapt/main.nf
+++ b/src/nf_modules/cutadapt/main.nf
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