Showing
- src/nf_modules/fastq_screen/main.nf 29 additions, 0 deletionssrc/nf_modules/fastq_screen/main.nf
- src/nf_modules/fastqc/main.nf 35 additions, 0 deletionssrc/nf_modules/fastqc/main.nf
- src/nf_modules/flexi_splitter/main.nf 86 additions, 0 deletionssrc/nf_modules/flexi_splitter/main.nf
- src/nf_modules/flexi_splitter/marseq_flexi_splitter.yaml 45 additions, 0 deletionssrc/nf_modules/flexi_splitter/marseq_flexi_splitter.yaml
- src/nf_modules/flexi_splitter/toy_file_paired.yaml 54 additions, 0 deletionssrc/nf_modules/flexi_splitter/toy_file_paired.yaml
- src/nf_modules/g2gtools/main.nf 200 additions, 0 deletionssrc/nf_modules/g2gtools/main.nf
- src/nf_modules/gatk3/main.nf 389 additions, 0 deletionssrc/nf_modules/gatk3/main.nf
- src/nf_modules/gatk4/main.nf 663 additions, 0 deletionssrc/nf_modules/gatk4/main.nf
- src/nf_modules/gffread/main.nf 66 additions, 0 deletionssrc/nf_modules/gffread/main.nf
- src/nf_modules/guppy-cpu/main.nf 47 additions, 0 deletionssrc/nf_modules/guppy-cpu/main.nf
- src/nf_modules/guppy-gpu/main.nf 46 additions, 0 deletionssrc/nf_modules/guppy-gpu/main.nf
- src/nf_modules/hisat2/main.nf 104 additions, 0 deletionssrc/nf_modules/hisat2/main.nf
- src/nf_modules/htseq/main.nf 56 additions, 0 deletionssrc/nf_modules/htseq/main.nf
- src/nf_modules/kallisto/main.nf 71 additions, 0 deletionssrc/nf_modules/kallisto/main.nf
- src/nf_modules/kb/main.nf 467 additions, 0 deletionssrc/nf_modules/kb/main.nf
- src/nf_modules/macs2/main.nf 89 additions, 0 deletionssrc/nf_modules/macs2/main.nf
- src/nf_modules/macs3/main.nf 88 additions, 0 deletionssrc/nf_modules/macs3/main.nf
- src/nf_modules/minimap2/main.nf 66 additions, 0 deletionssrc/nf_modules/minimap2/main.nf
- src/nf_modules/multiqc/main.nf 74 additions, 0 deletionssrc/nf_modules/multiqc/main.nf
- src/nf_modules/picard/main.nf 106 additions, 0 deletionssrc/nf_modules/picard/main.nf
src/nf_modules/fastq_screen/main.nf
0 → 100644
This diff is collapsed.
src/nf_modules/fastqc/main.nf
0 → 100644
This diff is collapsed.
src/nf_modules/flexi_splitter/main.nf
0 → 100644
This diff is collapsed.
This diff is collapsed.
This diff is collapsed.
src/nf_modules/g2gtools/main.nf
0 → 100644
This diff is collapsed.
src/nf_modules/gatk3/main.nf
0 → 100644
This diff is collapsed.
src/nf_modules/gatk4/main.nf
0 → 100644
This diff is collapsed.
src/nf_modules/gffread/main.nf
0 → 100644
This diff is collapsed.
src/nf_modules/guppy-cpu/main.nf
0 → 100644
This diff is collapsed.
src/nf_modules/guppy-gpu/main.nf
0 → 100644
This diff is collapsed.
src/nf_modules/hisat2/main.nf
0 → 100644
This diff is collapsed.
src/nf_modules/htseq/main.nf
0 → 100644
This diff is collapsed.
src/nf_modules/kallisto/main.nf
0 → 100644
This diff is collapsed.
src/nf_modules/kb/main.nf
0 → 100644
This diff is collapsed.
src/nf_modules/macs2/main.nf
0 → 100644
This diff is collapsed.
src/nf_modules/macs3/main.nf
0 → 100644
This diff is collapsed.
src/nf_modules/minimap2/main.nf
0 → 100644
This diff is collapsed.
src/nf_modules/multiqc/main.nf
0 → 100644
This diff is collapsed.
src/nf_modules/picard/main.nf
0 → 100644
This diff is collapsed.