src/.docker_modules/umi_tools/1.0.0/docker_init.sh

+#!/bin/sh
+
+# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
+#
+# SPDX-License-Identifier: AGPL-3.0-or-later
+
+docker pull lbmc/umi_tools:1.0.0
+# docker build src/.docker_modules/umi_tools/1.0.0/ -t 'lbmc/umi_tools:1.0.0'
+# docker push lbmc/umi_tools:1.0.0
+docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/umi_tools:1.0.0" --push src/.docker_modules/umi_tools/1.0.0

src/docker_modules/UrQt/d62c1f8/Dockerfile → src/.docker_modules/urqt/d62c1f8/Dockerfile

+# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
+#
+# SPDX-License-Identifier: AGPL-3.0-or-later
+
 FROM ubuntu:18.04
 MAINTAINER Laurent Modolo
 
+ENV URQT_VERSION=d62c1f8
 ENV PACKAGES git=1:2.17* \
    build-essential=12.4* \
    ca-certificates=20180409 \
+   procps \
    zlib1g-dev=1:1.2.11*
 
 RUN apt-get update && \

src/.docker_modules/urqt/d62c1f8/docker_init.sh

+#!/bin/sh
+
+# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
+#
+# SPDX-License-Identifier: AGPL-3.0-or-later
+
+docker pull lbmc/urqt:d62c1f8
+# docker build src/.docker_modules/urqt/d62c1f8 -t 'lbmc/urqt:d62c1f8'
+# docker push lbmc/urqt:d62c1f8
+docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/urqt:d62c1f8" --push src/.docker_modules/urqt/d62c1f8

src/.singularity_in2p3

+/sps/lbmc/common/singularity/
\ No newline at end of file

src/.singularity_psmn

+/Xnfs/abc/singularity/
\ No newline at end of file

src/docker_modules/BEDtools/2.25.0/docker_init.sh

-#!/bin/sh
-docker build src/docker_modules/BEDtools/2.25.0 -t 'bedtools:2.25.0'

src/docker_modules/Bowtie2/2.3.4.1/docker_init.sh

-#!/bin/sh
-docker build src/docker_modules/Bowtie2/2.3.4.1 -t 'bowtie2:2.3.4.1'

src/docker_modules/FastQC/0.11.5/docker_init.sh

-#!/bin/sh
-docker build src/docker_modules/FastQC/0.11.5 -t 'fastqc:0.11.5'

src/docker_modules/HISAT2/2.0.0/docker_init.sh

-#!/bin/sh
-docker build src/docker_modules/HISAT2/2.0.0 -t 'hisat2:2.0.0'

src/docker_modules/HTSeq/0.8.0/docker_init.sh

-#!/bin/sh
-docker build src/docker_modules/HTSeq/0.8.0 -t 'htseq:0.8.0'

src/docker_modules/Kallisto/0.43.1/docker_init.sh

-#!/bin/sh
-docker build src/docker_modules/Kallisto/0.43.1 -t 'kallisto:0.43.1'

src/docker_modules/Kallisto/0.44.0/docker_init.sh

-#!/bin/sh
-docker build src/docker_modules/Kallisto/0.44.0 -t 'kallisto:0.44.0'

src/docker_modules/MultiQC/1.0/docker_init.sh

-#!/bin/sh
-docker build src/docker_modules/MultiQC/1.0 -t 'multiqc:1.0'

src/docker_modules/RSEM/1.3.0/docker_init.sh

-#!/bin/sh
-docker build src/docker_modules/RSEM/1.3.0 -t 'rsem:1.3.0'

src/docker_modules/SAMtools/1.7/docker_init.sh

-#!/bin/sh
-docker build src/docker_modules/SAMtools/1.7 -t 'samtools:1.7'

src/docker_modules/SRAtoolkit/2.8.2/docker_init.sh

-#!/bin/sh
-docker build src/docker_modules/SRAtoolkit/2.8.2 -t 'sratoolkit:2.8.2'

src/docker_modules/Salmon/0.8.2/docker_init.sh

-#!/bin/sh
-docker build src/docker_modules/Salmon/0.8.2 -t 'salmon:0.8.2'

src/docker_modules/TopHat/2.1.1/Dockerfile

-FROM ubuntu:18.04
-MAINTAINER Laurent Modolo
-
-ENV TOPHAT_VERSION=2.1.1
-ENV PACKAGES tophat=${BOWTIE2_VERSION}*
-
-RUN apt-get update && \
-    apt-get install -y --no-install-recommends ${PACKAGES} && \
-    apt-get clean

src/docker_modules/TopHat/2.1.1/docker_init.sh

-#!/bin/sh
-docker build src/docker_modules/TopHat/2.1.1 -t 'tophat:2.1.1'

src/docker_modules/Trimmomatic/0.36/docker_init.sh

-#!/bin/sh
-docker build src/docker_modules/Trimmomatic/0.36 -t 'trimmomatic:0.36'