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Unverified Commit 32312418 authored by Laurent Modolo's avatar Laurent Modolo
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add .signularity_in2p3 folder to fix lock problem in nf

parent 3192a86d
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...@@ -35,7 +35,7 @@ profiles { ...@@ -35,7 +35,7 @@ profiles {
} }
ccin2p3 { ccin2p3 {
singularity.enabled = true singularity.enabled = true
singularity.cacheDir = "/sps/lbmc/common/singularity/" singularity.cacheDir = "$baseDir/.src/singularity_in2p3/"
singularity.runOptions = "--bind /pbs,/sps,/scratch" singularity.runOptions = "--bind /pbs,/sps,/scratch"
process{ process{
withName: index_bam { withName: index_bam {
......
...@@ -36,7 +36,7 @@ profiles { ...@@ -36,7 +36,7 @@ profiles {
} }
ccin2p3 { ccin2p3 {
singularity.enabled = true singularity.enabled = true
singularity.cacheDir = "/sps/lbmc/common/singularity/" singularity.cacheDir = "$baseDir/.src/singularity_in2p3/"
singularity.runOptions = "--bind /pbs,/sps,/scratch" singularity.runOptions = "--bind /pbs,/sps,/scratch"
process{ process{
withName: sort_bam { withName: sort_bam {
......
...@@ -35,7 +35,7 @@ profiles { ...@@ -35,7 +35,7 @@ profiles {
} }
ccin2p3 { ccin2p3 {
singularity.enabled = true singularity.enabled = true
singularity.cacheDir = "/sps/lbmc/common/singularity/" singularity.cacheDir = "$baseDir/.src/singularity_in2p3/"
singularity.runOptions = "--bind /pbs,/sps,/scratch" singularity.runOptions = "--bind /pbs,/sps,/scratch"
process{ process{
withName: split_bam { withName: split_bam {
......
...@@ -35,7 +35,7 @@ profiles { ...@@ -35,7 +35,7 @@ profiles {
} }
ccin2p3 { ccin2p3 {
singularity.enabled = true singularity.enabled = true
singularity.cacheDir = "/sps/lbmc/common/singularity/" singularity.cacheDir = "$baseDir/.src/singularity_in2p3/"
singularity.runOptions = "--bind /pbs,/sps,/scratch" singularity.runOptions = "--bind /pbs,/sps,/scratch"
process{ process{
withName: fastq_dump { withName: fastq_dump {
......
...@@ -36,7 +36,7 @@ profiles { ...@@ -36,7 +36,7 @@ profiles {
} }
ccin2p3 { ccin2p3 {
singularity.enabled = true singularity.enabled = true
singularity.cacheDir = "/sps/lbmc/common/singularity/" singularity.cacheDir = "$baseDir/.src/singularity_in2p3/"
singularity.runOptions = "--bind /pbs,/sps,/scratch" singularity.runOptions = "--bind /pbs,/sps,/scratch"
process{ process{
withName: index_fasta { withName: index_fasta {
......
...@@ -36,7 +36,7 @@ profiles { ...@@ -36,7 +36,7 @@ profiles {
} }
ccin2p3 { ccin2p3 {
singularity.enabled = true singularity.enabled = true
singularity.cacheDir = "/sps/lbmc/common/singularity/" singularity.cacheDir = "$baseDir/.src/singularity_in2p3/"
singularity.runOptions = "--bind /pbs,/sps,/scratch" singularity.runOptions = "--bind /pbs,/sps,/scratch"
process{ process{
withName: mapping_fastq { withName: mapping_fastq {
......
...@@ -36,7 +36,7 @@ profiles { ...@@ -36,7 +36,7 @@ profiles {
} }
ccin2p3 { ccin2p3 {
singularity.enabled = true singularity.enabled = true
singularity.cacheDir = "/sps/lbmc/common/singularity/" singularity.cacheDir = "$baseDir/.src/singularity_in2p3/"
singularity.runOptions = "--bind /pbs,/sps,/scratch" singularity.runOptions = "--bind /pbs,/sps,/scratch"
process{ process{
withName: mapping_fastq { withName: mapping_fastq {
......
...@@ -53,7 +53,7 @@ profiles { ...@@ -53,7 +53,7 @@ profiles {
} }
ccin2p3 { ccin2p3 {
singularity.enabled = true singularity.enabled = true
singularity.cacheDir = "/sps/lbmc/common/singularity/" singularity.cacheDir = "$baseDir/.src/singularity_in2p3/"
singularity.runOptions = "--bind /pbs,/sps,/scratch" singularity.runOptions = "--bind /pbs,/sps,/scratch"
process{ process{
withName: sort_bam { withName: sort_bam {
......
...@@ -36,7 +36,7 @@ profiles { ...@@ -36,7 +36,7 @@ profiles {
} }
ccin2p3 { ccin2p3 {
singularity.enabled = true singularity.enabled = true
singularity.cacheDir = "/sps/lbmc/common/singularity/" singularity.cacheDir = "$baseDir/.src/singularity_in2p3/"
singularity.runOptions = "--bind /pbs,/sps,/scratch" singularity.runOptions = "--bind /pbs,/sps,/scratch"
process{ process{
withName: trimming { withName: trimming {
......
...@@ -36,7 +36,7 @@ profiles { ...@@ -36,7 +36,7 @@ profiles {
} }
ccin2p3 { ccin2p3 {
singularity.enabled = true singularity.enabled = true
singularity.cacheDir = "/sps/lbmc/common/singularity/" singularity.cacheDir = "$baseDir/.src/singularity_in2p3/"
singularity.runOptions = "--bind /pbs,/sps,/scratch" singularity.runOptions = "--bind /pbs,/sps,/scratch"
process{ process{
withName: trimming { withName: trimming {
......
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