Verified Commit 9293f190 authored by Laurent Modolo's avatar Laurent Modolo
Browse files

emaze: change input to follow change to t2g in kb

parent 3de4d8de
...@@ -12,13 +12,10 @@ workflow count { ...@@ -12,13 +12,10 @@ workflow count {
take: take:
bam_idx bam_idx
fasta fasta
transcript_to_gene gtf
main: main:
transcript_to_gene tr2g(gtf)
.ifEmpty(["NO T2G", ""])
.set{ transcript_to_gene_optional }
tr2g(gtf, transcript_to_gene_optional)
fasta_to_transcripts_lengths(fasta) fasta_to_transcripts_lengths(fasta)
bam2ec(bam_idx, fasta_to_transcripts_lengths.out.tsv.collect()) bam2ec(bam_idx, fasta_to_transcripts_lengths.out.tsv.collect())
emase(bam2ec.out.bin, bam2ec.out.tsv, tr2g.out.t2g) emase(bam2ec.out.bin, bam2ec.out.tsv, tr2g.out.t2g)
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