Explore projects

Pipeline for phylogenetic analysis of legionella genes.

This repository allow to reproduce the analysis and create figures as in the current publication.

Create venn diagram from 2 bed files

Source code for generating the main figures of the article "Reduction of a sothcastic model of gene expression: Lagrangian dynamics gives acces to basins of attraction as cell types and metastability".

This repository is a template containing scripts to help you build your own nextflow pipeline.

Script to detect recombination tracts on the output of an analysis of the SNPs from a donor strain on a transformed bacteria. Project from Léo Hardy and Xavier Charpentier

Gene expression in cells expressing the anti-viral protein ISG20 or not. RNAseq analysis and graphic representations.

Mapping and variant calling of reads on great ape reference genomes. From Julie Plantade.

This project allows to display the size distribution of genomic intervals inside every bed files located in a given directory

documents pour la formation à l'analyse de données RNAseq

Positive selection screen on SARS-CoV-2 interactome: Analysis of DGINN pipeline's output.

Scripts exploring Chimp and Gorilla data with different packages for population genetics (pegas, adegenet, popGenome, etc.)