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This repository is a template containing scripts to help you build your own nextflow pipeline.

This repository is a template containing scripts to help you build your own nextflow pipeline.

Script to detect recombination tracts on the output of an analysis of the SNPs from a donor strain on a transformed bacteria. Project from Léo Hardy and Xavier Charpentier

Gene expression in cells expressing the anti-viral protein ISG20 or not. RNAseq analysis and graphic representations.

Create a Nextflow pipeline for juicer module

Mapping and variant calling of reads on great ape reference genomes. From Julie Plantade.

This project allows to display the size distribution of genomic intervals inside every bed files located in a given directory

documents pour la formation à l'analyse de données RNAseq

Positive selection screen on SARS-CoV-2 interactome: Analysis of DGINN pipeline's output.

Scripts exploring Chimp and Gorilla data with different packages for population genetics (pegas, adegenet, popGenome, etc.)

This project aims to create plots that will represent the coverage of transcripts in different conditions