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minimal git repo

This repository is a template containing scripts to help you build your own nextflow pipeline.

François Gindraud, a postdoc in the SBDM Team, who has a loot of experience in software development, will be with us for a few months. François, will be able to give a series of small tutorials session on how to write better code.

This repository is a template containing scripts to help you build your own nextflow pipeline.

Pipeline dedicated to ChIPseq.

Just a test project to see how mport on GitHub works

Coevolution analysis: Retrieval of orthologs of ComR and RocC in Legionella, alignment and phylogeny.

Pipeline for phylogenetic analysis of legionella genes.

This repository allow to reproduce the analysis and create figures as in the current publication.

Create venn diagram from 2 bed files

Source code for generating the main figures of the article "Reduction of a sothcastic model of gene expression: Lagrangian dynamics gives acces to basins of attraction as cell types and metastability".

This repository is a template containing scripts to help you build your own nextflow pipeline.

Script to detect recombination tracts on the output of an analysis of the SNPs from a donor strain on a transformed bacteria. Project from Léo Hardy and Xavier Charpentier