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Fontrodona Nicolas's avatar
src/nt_composition/distance.py: modification of create_all_distance_figures to...
nfontrod authored 
src/nt_composition/distance.py: modification of create_all_distance_figures to only concider good ChIA-PET projects + modification of compute_controls_distances, add_in_dic, create_distance_table to create a table saying how many interaction are located in control and test groups
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README.md

ChIA-PET network

Description

Prerequisites

  1. This project is coded in python3.8 and uses the modules listed in requirements.txt. To easily install them with pip, enter in your terminal:
pip install -r requirements.txt
  1. PmagicGEO - a script that allows to obtain metadata associated to a GSE or a GSM (GEO classification)