From 3ced2125795763aad94aea3b19eb96dbfdc2f518 Mon Sep 17 00:00:00 2001 From: Laurent Modolo <laurent@modolo.fr> Date: Tue, 5 Nov 2019 17:35:45 +0100 Subject: [PATCH] docker: change config file to use lbmc/ docker repository --- src/nf_modules/bedtools/fasta_from_bed.config | 2 +- src/nf_modules/bowtie/indexing.config | 2 +- src/nf_modules/bowtie/mapping_paired.config | 2 +- src/nf_modules/bowtie/mapping_single.config | 2 +- src/nf_modules/bowtie2/indexing.config | 2 +- src/nf_modules/bowtie2/mapping_paired.config | 2 +- src/nf_modules/bowtie2/mapping_single.config | 2 +- src/nf_modules/bwa/indexing.config | 2 +- src/nf_modules/bwa/mapping_paired.config | 2 +- src/nf_modules/cutadapt/adaptor_removal_paired.config | 2 +- src/nf_modules/cutadapt/adaptor_removal_single.config | 2 +- src/nf_modules/cutadapt/trimming_paired.config | 2 +- src/nf_modules/cutadapt/trimming_single.config | 2 +- src/nf_modules/deeptools/bam_to_bigwig.config | 4 ++-- src/nf_modules/deeptools/compute_matrix.config | 2 +- src/nf_modules/deeptools/plot_profile.config | 2 +- src/nf_modules/fastp/fastp_paired.config | 2 +- src/nf_modules/fastp/fastp_single.config | 2 +- src/nf_modules/fastqc/fastqc_paired.config | 2 +- src/nf_modules/fastqc/fastqc_single.config | 2 +- src/nf_modules/hisat2/indexing.config | 2 +- src/nf_modules/hisat2/mapping_paired.config | 2 +- src/nf_modules/hisat2/mapping_single.config | 2 +- src/nf_modules/htseq/htseq.config | 4 ++-- src/nf_modules/kallisto/indexing.config | 2 +- src/nf_modules/kallisto/mapping_paired.config | 2 +- src/nf_modules/kallisto/mapping_single.config | 2 +- src/nf_modules/macs2/peak_calling.config | 2 +- src/nf_modules/multiqc/multiqc_paired.config | 4 ++-- src/nf_modules/multiqc/multiqc_single.config | 4 ++-- src/nf_modules/music/peak_calling_single.config | 6 +++--- src/nf_modules/rsem/indexing.config | 2 +- src/nf_modules/rsem/quantification_paired.config | 2 +- src/nf_modules/rsem/quantification_single.config | 2 +- src/nf_modules/sambamba/index_bams.config | 2 +- src/nf_modules/sambamba/sort_bams.config | 2 +- src/nf_modules/sambamba/split_bams.config | 2 +- src/nf_modules/samblaster/dedup_sams.config | 2 +- src/nf_modules/samtools/filter_bams.config | 2 +- src/nf_modules/samtools/index_bams.config | 2 +- src/nf_modules/samtools/sort_bams.config | 2 +- src/nf_modules/samtools/split_bams.config | 2 +- src/nf_modules/sratoolkit/fastqdump.config | 2 +- src/nf_modules/subread/subread.config | 4 ++-- src/nf_modules/urqt/trimming_paired.config | 2 +- src/nf_modules/urqt/trimming_single.config | 2 +- 46 files changed, 53 insertions(+), 53 deletions(-) diff --git a/src/nf_modules/bedtools/fasta_from_bed.config b/src/nf_modules/bedtools/fasta_from_bed.config index 1a22521..7230e0a 100644 --- a/src/nf_modules/bedtools/fasta_from_bed.config +++ b/src/nf_modules/bedtools/fasta_from_bed.config @@ -4,7 +4,7 @@ profiles { docker.enabled = true process { withName: fasta_from_bed { - container = "bedtools:2.25.0" + container = "lbmc/bedtools:2.25.0" cpus = 1 } } diff --git a/src/nf_modules/bowtie/indexing.config b/src/nf_modules/bowtie/indexing.config index 06b5720..aca1125 100644 --- a/src/nf_modules/bowtie/indexing.config +++ b/src/nf_modules/bowtie/indexing.config @@ -5,7 +5,7 @@ profiles { process { withName: index_fasta { cpus = 4 - container = "bowtie:1.2.2" + container = "lbmc/bowtie:1.2.2" } } } diff --git a/src/nf_modules/bowtie/mapping_paired.config b/src/nf_modules/bowtie/mapping_paired.config index 61f40f9..b3c8e31 100644 --- a/src/nf_modules/bowtie/mapping_paired.config +++ b/src/nf_modules/bowtie/mapping_paired.config @@ -4,7 +4,7 @@ profiles { docker.enabled = true process { withName: mapping_fastq { - container = "bowtie:1.2.2" + container = "lbmc/bowtie:1.2.2" cpus = 4 } } diff --git a/src/nf_modules/bowtie/mapping_single.config b/src/nf_modules/bowtie/mapping_single.config index 61f40f9..b3c8e31 100644 --- a/src/nf_modules/bowtie/mapping_single.config +++ b/src/nf_modules/bowtie/mapping_single.config @@ -4,7 +4,7 @@ profiles { docker.enabled = true process { withName: mapping_fastq { - container = "bowtie:1.2.2" + container = "lbmc/bowtie:1.2.2" cpus = 4 } } diff --git a/src/nf_modules/bowtie2/indexing.config b/src/nf_modules/bowtie2/indexing.config index 2d52dc4..597f971 100644 --- a/src/nf_modules/bowtie2/indexing.config +++ b/src/nf_modules/bowtie2/indexing.config @@ -4,7 +4,7 @@ profiles { docker.enabled = true process { withName: index_fasta { - container = "bowtie2:2.3.4.1" + container = "lbmc/bowtie2:2.3.4.1" cpus = 4 } } diff --git a/src/nf_modules/bowtie2/mapping_paired.config b/src/nf_modules/bowtie2/mapping_paired.config index 85655e4..10dcb68 100644 --- a/src/nf_modules/bowtie2/mapping_paired.config +++ b/src/nf_modules/bowtie2/mapping_paired.config @@ -4,7 +4,7 @@ profiles { docker.enabled = true process { withName: mapping_fastq { - container = "bowtie2:2.3.4.1" + container = "lbmc/bowtie2:2.3.4.1" cpus = 4 } } diff --git a/src/nf_modules/bowtie2/mapping_single.config b/src/nf_modules/bowtie2/mapping_single.config index 85655e4..10dcb68 100644 --- a/src/nf_modules/bowtie2/mapping_single.config +++ b/src/nf_modules/bowtie2/mapping_single.config @@ -4,7 +4,7 @@ profiles { docker.enabled = true process { withName: mapping_fastq { - container = "bowtie2:2.3.4.1" + container = "lbmc/bowtie2:2.3.4.1" cpus = 4 } } diff --git a/src/nf_modules/bwa/indexing.config b/src/nf_modules/bwa/indexing.config index c970b5b..6f01a50 100644 --- a/src/nf_modules/bwa/indexing.config +++ b/src/nf_modules/bwa/indexing.config @@ -4,7 +4,7 @@ profiles { docker.enabled = true process { withName: index_fasta { - container = "bwa:0.7.17" + container = "lbmc/bwa:0.7.17" cpus = 4 } } diff --git a/src/nf_modules/bwa/mapping_paired.config b/src/nf_modules/bwa/mapping_paired.config index af4f968..d475bf7 100644 --- a/src/nf_modules/bwa/mapping_paired.config +++ b/src/nf_modules/bwa/mapping_paired.config @@ -4,7 +4,7 @@ profiles { docker.enabled = true process { withName: mapping_fastq { - container = "bwa:0.7.17" + container = "lbmc/bwa:0.7.17" cpus = 4 } } diff --git a/src/nf_modules/cutadapt/adaptor_removal_paired.config b/src/nf_modules/cutadapt/adaptor_removal_paired.config index 8add46c..852779a 100644 --- a/src/nf_modules/cutadapt/adaptor_removal_paired.config +++ b/src/nf_modules/cutadapt/adaptor_removal_paired.config @@ -4,7 +4,7 @@ profiles { docker.enabled = true process { withName: adaptor_removal { - container = "cutadapt:2.1" + container = "lbmc/cutadapt:2.1" cpus = 1 } } diff --git a/src/nf_modules/cutadapt/adaptor_removal_single.config b/src/nf_modules/cutadapt/adaptor_removal_single.config index 8add46c..852779a 100644 --- a/src/nf_modules/cutadapt/adaptor_removal_single.config +++ b/src/nf_modules/cutadapt/adaptor_removal_single.config @@ -4,7 +4,7 @@ profiles { docker.enabled = true process { withName: adaptor_removal { - container = "cutadapt:2.1" + container = "lbmc/cutadapt:2.1" cpus = 1 } } diff --git a/src/nf_modules/cutadapt/trimming_paired.config b/src/nf_modules/cutadapt/trimming_paired.config index 721d880..3dfeb18 100644 --- a/src/nf_modules/cutadapt/trimming_paired.config +++ b/src/nf_modules/cutadapt/trimming_paired.config @@ -4,7 +4,7 @@ profiles { docker.enabled = true process { withName: trimming { - container = "cutadapt:2.1" + container = "lbmc/cutadapt:2.1" cpus = 1 } } diff --git a/src/nf_modules/cutadapt/trimming_single.config b/src/nf_modules/cutadapt/trimming_single.config index 721d880..3dfeb18 100644 --- a/src/nf_modules/cutadapt/trimming_single.config +++ b/src/nf_modules/cutadapt/trimming_single.config @@ -4,7 +4,7 @@ profiles { docker.enabled = true process { withName: trimming { - container = "cutadapt:2.1" + container = "lbmc/cutadapt:2.1" cpus = 1 } } diff --git a/src/nf_modules/deeptools/bam_to_bigwig.config b/src/nf_modules/deeptools/bam_to_bigwig.config index 5be6a4c..b5276da 100644 --- a/src/nf_modules/deeptools/bam_to_bigwig.config +++ b/src/nf_modules/deeptools/bam_to_bigwig.config @@ -4,11 +4,11 @@ profiles { docker.enabled = true process { withName: index_bam { - container = "sambamba:0.6.7" + container = "lbmc/sambamba:0.6.7" cpus = 4 } withName: bam_to_bigwig { - container = "deeptools:3.0.2" + container = "lbmc/deeptools:3.0.2" cpus = 4 } } diff --git a/src/nf_modules/deeptools/compute_matrix.config b/src/nf_modules/deeptools/compute_matrix.config index b098676..55c03e3 100644 --- a/src/nf_modules/deeptools/compute_matrix.config +++ b/src/nf_modules/deeptools/compute_matrix.config @@ -4,7 +4,7 @@ profiles { docker.enabled = true process { withName: compute_matrix { - container = "deeptools:3.0.2" + container = "lbmc/deeptools:3.0.2" cpus = 4 } } diff --git a/src/nf_modules/deeptools/plot_profile.config b/src/nf_modules/deeptools/plot_profile.config index e9fe150..2dd2466 100644 --- a/src/nf_modules/deeptools/plot_profile.config +++ b/src/nf_modules/deeptools/plot_profile.config @@ -4,7 +4,7 @@ profiles { docker.enabled = true process { withName: plot_profile { - container = "deeptools:3.0.2" + container = "lbmc/deeptools:3.0.2" cpus = 4 } } diff --git a/src/nf_modules/fastp/fastp_paired.config b/src/nf_modules/fastp/fastp_paired.config index df041cb..c8a289f 100644 --- a/src/nf_modules/fastp/fastp_paired.config +++ b/src/nf_modules/fastp/fastp_paired.config @@ -4,7 +4,7 @@ profiles { docker.enabled = true process { withName: fastp_fastq { - container = "fastp:0.19.7" + container = "lbmc/fastp:0.19.7" cpus = 1 } } diff --git a/src/nf_modules/fastp/fastp_single.config b/src/nf_modules/fastp/fastp_single.config index df041cb..c8a289f 100644 --- a/src/nf_modules/fastp/fastp_single.config +++ b/src/nf_modules/fastp/fastp_single.config @@ -4,7 +4,7 @@ profiles { docker.enabled = true process { withName: fastp_fastq { - container = "fastp:0.19.7" + container = "lbmc/fastp:0.19.7" cpus = 1 } } diff --git a/src/nf_modules/fastqc/fastqc_paired.config b/src/nf_modules/fastqc/fastqc_paired.config index 2ed15c5..1c02c54 100644 --- a/src/nf_modules/fastqc/fastqc_paired.config +++ b/src/nf_modules/fastqc/fastqc_paired.config @@ -4,7 +4,7 @@ profiles { docker.enabled = true process { withName: fastqc_fastq { - container = "fastqc:0.11.5" + container = "lbmc/fastqc:0.11.5" cpus = 1 } } diff --git a/src/nf_modules/fastqc/fastqc_single.config b/src/nf_modules/fastqc/fastqc_single.config index 2ed15c5..1c02c54 100644 --- a/src/nf_modules/fastqc/fastqc_single.config +++ b/src/nf_modules/fastqc/fastqc_single.config @@ -4,7 +4,7 @@ profiles { docker.enabled = true process { withName: fastqc_fastq { - container = "fastqc:0.11.5" + container = "lbmc/fastqc:0.11.5" cpus = 1 } } diff --git a/src/nf_modules/hisat2/indexing.config b/src/nf_modules/hisat2/indexing.config index d97e7c7..db0217a 100644 --- a/src/nf_modules/hisat2/indexing.config +++ b/src/nf_modules/hisat2/indexing.config @@ -4,7 +4,7 @@ profiles { docker.enabled = true process { withName: index_fasta { - container = "hisat2:2.1.0" + container = "lbmc/hisat2:2.1.0" cpus = 4 } } diff --git a/src/nf_modules/hisat2/mapping_paired.config b/src/nf_modules/hisat2/mapping_paired.config index c0b9c80..d496d86 100644 --- a/src/nf_modules/hisat2/mapping_paired.config +++ b/src/nf_modules/hisat2/mapping_paired.config @@ -5,7 +5,7 @@ profiles { process { withName: mapping_fastq { cpus = 4 - container = "hisat2:2.1.0" + container = "lbmc/hisat2:2.1.0" } } } diff --git a/src/nf_modules/hisat2/mapping_single.config b/src/nf_modules/hisat2/mapping_single.config index c0b9c80..d496d86 100644 --- a/src/nf_modules/hisat2/mapping_single.config +++ b/src/nf_modules/hisat2/mapping_single.config @@ -5,7 +5,7 @@ profiles { process { withName: mapping_fastq { cpus = 4 - container = "hisat2:2.1.0" + container = "lbmc/hisat2:2.1.0" } } } diff --git a/src/nf_modules/htseq/htseq.config b/src/nf_modules/htseq/htseq.config index a04f085..d20648c 100644 --- a/src/nf_modules/htseq/htseq.config +++ b/src/nf_modules/htseq/htseq.config @@ -4,11 +4,11 @@ profiles { docker.enabled = true process { withName: sort_bam { - container = "samtools:1.7" + container = "lbmc/samtools:1.7" cpus = 1 } withName: counting { - container = "htseq:0.11.2" + container = "lbmc/htseq:0.11.2" cpus = 1 } } diff --git a/src/nf_modules/kallisto/indexing.config b/src/nf_modules/kallisto/indexing.config index b677b61..5b126bb 100644 --- a/src/nf_modules/kallisto/indexing.config +++ b/src/nf_modules/kallisto/indexing.config @@ -4,7 +4,7 @@ profiles { docker.enabled = true process { withNamek index_fasta { - container = "kallisto:0.44.0" + container = "lbmc/kallisto:0.44.0" cpus = 4 } } diff --git a/src/nf_modules/kallisto/mapping_paired.config b/src/nf_modules/kallisto/mapping_paired.config index 620e506..7680223 100644 --- a/src/nf_modules/kallisto/mapping_paired.config +++ b/src/nf_modules/kallisto/mapping_paired.config @@ -4,7 +4,7 @@ profiles { docker.enabled = true process { withName: mapping_fastq { - container = "kallisto:0.44.0" + container = "lbmc/kallisto:0.44.0" cpus = 4 } } diff --git a/src/nf_modules/kallisto/mapping_single.config b/src/nf_modules/kallisto/mapping_single.config index 620e506..7680223 100644 --- a/src/nf_modules/kallisto/mapping_single.config +++ b/src/nf_modules/kallisto/mapping_single.config @@ -4,7 +4,7 @@ profiles { docker.enabled = true process { withName: mapping_fastq { - container = "kallisto:0.44.0" + container = "lbmc/kallisto:0.44.0" cpus = 4 } } diff --git a/src/nf_modules/macs2/peak_calling.config b/src/nf_modules/macs2/peak_calling.config index 8e3965f..18b639e 100644 --- a/src/nf_modules/macs2/peak_calling.config +++ b/src/nf_modules/macs2/peak_calling.config @@ -4,7 +4,7 @@ profiles { docker.enabled = true process { withName: peak_calling { - container = "macs2:2.1.2" + container = "lbmc/macs2:2.1.2" cpus = 4 } } diff --git a/src/nf_modules/multiqc/multiqc_paired.config b/src/nf_modules/multiqc/multiqc_paired.config index 1825a13..5344241 100644 --- a/src/nf_modules/multiqc/multiqc_paired.config +++ b/src/nf_modules/multiqc/multiqc_paired.config @@ -5,11 +5,11 @@ profiles { docker.enabled = true process { withName: fastqc_fastq { - container = "fastqc:0.11.5" + container = "lbmc/fastqc:0.11.5" cpus = 1 } withName: multiqc { - container = "multiqc:1.7" + container = "lbmc/multiqc:1.7" cpus = 1 } } diff --git a/src/nf_modules/multiqc/multiqc_single.config b/src/nf_modules/multiqc/multiqc_single.config index 6a2edfb..a52a9a4 100644 --- a/src/nf_modules/multiqc/multiqc_single.config +++ b/src/nf_modules/multiqc/multiqc_single.config @@ -4,11 +4,11 @@ profiles { docker.enabled = true process { withName: fastqc_fastq { - container = "fastqc:0.11.5" + container = "lbmc/fastqc:0.11.5" cpus = 1 } withName: multiqc { - container = "multiqc:1.7" + container = "lbmc/multiqc:1.7" cpus = 1 } } diff --git a/src/nf_modules/music/peak_calling_single.config b/src/nf_modules/music/peak_calling_single.config index dc46d8c..613fdc4 100644 --- a/src/nf_modules/music/peak_calling_single.config +++ b/src/nf_modules/music/peak_calling_single.config @@ -4,15 +4,15 @@ profiles { docker.enabled = true process { withName: compute_mappability { - container = "music:6613c53" + container = "lbmc/music:6613c53" cpus = 1 } withName: music_preprocessing { - container = "music:6613c53" + container = "lbmc/music:6613c53" cpus = 1 } withName: music_computation{ - container = "music:6613c53" + container = "lbmc/music:6613c53" cpus = 1 } } diff --git a/src/nf_modules/rsem/indexing.config b/src/nf_modules/rsem/indexing.config index d58a310..602f831 100644 --- a/src/nf_modules/rsem/indexing.config +++ b/src/nf_modules/rsem/indexing.config @@ -4,7 +4,7 @@ profiles { docker.enabled = true process { withName: index_fasta { - container = "rsem:1.3.0" + container = "lbmc/rsem:1.3.0" cpus = 4 } } diff --git a/src/nf_modules/rsem/quantification_paired.config b/src/nf_modules/rsem/quantification_paired.config index 75aae6e..9a2f210 100644 --- a/src/nf_modules/rsem/quantification_paired.config +++ b/src/nf_modules/rsem/quantification_paired.config @@ -4,7 +4,7 @@ profiles { docker.enabled = true process { withName: mapping_fastq { - container = "rsem:1.3.0" + container = "lbmc/rsem:1.3.0" cpus = 4 } } diff --git a/src/nf_modules/rsem/quantification_single.config b/src/nf_modules/rsem/quantification_single.config index 75aae6e..9a2f210 100644 --- a/src/nf_modules/rsem/quantification_single.config +++ b/src/nf_modules/rsem/quantification_single.config @@ -4,7 +4,7 @@ profiles { docker.enabled = true process { withName: mapping_fastq { - container = "rsem:1.3.0" + container = "lbmc/rsem:1.3.0" cpus = 4 } } diff --git a/src/nf_modules/sambamba/index_bams.config b/src/nf_modules/sambamba/index_bams.config index 9199b7a..6de14fb 100644 --- a/src/nf_modules/sambamba/index_bams.config +++ b/src/nf_modules/sambamba/index_bams.config @@ -4,7 +4,7 @@ profiles { docker.enabled = true process { withName: index_bam { - container = "sambamba:0.6.9" + container = "lbmc/sambamba:0.6.9" cpus = 4 } } diff --git a/src/nf_modules/sambamba/sort_bams.config b/src/nf_modules/sambamba/sort_bams.config index 0a71fc3..ed485d3 100644 --- a/src/nf_modules/sambamba/sort_bams.config +++ b/src/nf_modules/sambamba/sort_bams.config @@ -4,7 +4,7 @@ profiles { docker.enabled = true process { withName: sort_bam { - container = "sambamba:0.6.9" + container = "lbmc/sambamba:0.6.9" cpus = 4 } } diff --git a/src/nf_modules/sambamba/split_bams.config b/src/nf_modules/sambamba/split_bams.config index 8a3e4ab..78752ed 100644 --- a/src/nf_modules/sambamba/split_bams.config +++ b/src/nf_modules/sambamba/split_bams.config @@ -4,7 +4,7 @@ profiles { docker.enabled = true process { withName: split_bam { - container = "sambamba:0.6.9" + container = "lbmc/sambamba:0.6.9" cpus = 4 } } diff --git a/src/nf_modules/samblaster/dedup_sams.config b/src/nf_modules/samblaster/dedup_sams.config index 7fd0516..e850a3f 100644 --- a/src/nf_modules/samblaster/dedup_sams.config +++ b/src/nf_modules/samblaster/dedup_sams.config @@ -4,7 +4,7 @@ profiles { docker.enabled = true process { withName: dedup_sam { - container = "samblaster:0.1.24" + container = "lbmc/samblaster:0.1.24" cpus = 4 } } diff --git a/src/nf_modules/samtools/filter_bams.config b/src/nf_modules/samtools/filter_bams.config index fc7a216..53b8e45 100644 --- a/src/nf_modules/samtools/filter_bams.config +++ b/src/nf_modules/samtools/filter_bams.config @@ -4,7 +4,7 @@ profiles { docker.enabled = true process { withName: filter_bam { - container = "samtools:1.7" + container = "lbmc/samtools:1.7" cpus = 4 } } diff --git a/src/nf_modules/samtools/index_bams.config b/src/nf_modules/samtools/index_bams.config index 8b910b6..692cd17 100644 --- a/src/nf_modules/samtools/index_bams.config +++ b/src/nf_modules/samtools/index_bams.config @@ -4,7 +4,7 @@ profiles { docker.enabled = true process { withName: index_bam { - container = "samtools:1.7" + container = "lbmc/samtools:1.7" cpus = 1 } } diff --git a/src/nf_modules/samtools/sort_bams.config b/src/nf_modules/samtools/sort_bams.config index d5e06e3..9955a35 100644 --- a/src/nf_modules/samtools/sort_bams.config +++ b/src/nf_modules/samtools/sort_bams.config @@ -4,7 +4,7 @@ profiles { docker.enabled = true process { withName: sort_bam { - container = "samtools:1.7" + container = "lbmc/samtools:1.7" cpus = 4 } } diff --git a/src/nf_modules/samtools/split_bams.config b/src/nf_modules/samtools/split_bams.config index c145bf3..fcb6c20 100644 --- a/src/nf_modules/samtools/split_bams.config +++ b/src/nf_modules/samtools/split_bams.config @@ -4,7 +4,7 @@ profiles { docker.enabled = true process { withName: split_bam { - container = "samtools:1.7" + container = "lbmc/samtools:1.7" cpus = 2 } } diff --git a/src/nf_modules/sratoolkit/fastqdump.config b/src/nf_modules/sratoolkit/fastqdump.config index ee6ed1f..d6c5b48 100644 --- a/src/nf_modules/sratoolkit/fastqdump.config +++ b/src/nf_modules/sratoolkit/fastqdump.config @@ -4,7 +4,7 @@ profiles { docker.enabled = true process { withName: fastq_dump { - container = "sratoolkit:2.8.2" + container = "lbmc/sratoolkit:2.8.2" cpus = 1 } } diff --git a/src/nf_modules/subread/subread.config b/src/nf_modules/subread/subread.config index 19f2046..e9debde 100644 --- a/src/nf_modules/subread/subread.config +++ b/src/nf_modules/subread/subread.config @@ -4,11 +4,11 @@ profiles { docker.enabled = true process { withName: sort_bam { - container = "samtools:1.7" + container = "lbmc/samtools:1.7" cpus = 1 } withName: counting { - container = "subread:1.6.4" + container = "lbmc/subread:1.6.4" cpus = 1 } } diff --git a/src/nf_modules/urqt/trimming_paired.config b/src/nf_modules/urqt/trimming_paired.config index dbe4e11..3e9227c 100644 --- a/src/nf_modules/urqt/trimming_paired.config +++ b/src/nf_modules/urqt/trimming_paired.config @@ -5,7 +5,7 @@ profiles { process { withName: trimming { cpus = 4 - container = "urqt:d62c1f8" + container = "lbmc/urqt:d62c1f8" } } } diff --git a/src/nf_modules/urqt/trimming_single.config b/src/nf_modules/urqt/trimming_single.config index 016d650..34bf633 100644 --- a/src/nf_modules/urqt/trimming_single.config +++ b/src/nf_modules/urqt/trimming_single.config @@ -4,7 +4,7 @@ profiles { docker.enabled = true process { withName: trimming { - container = "urqt:d62c1f8" + container = "lbmc/urqt:d62c1f8" cpus = 4 } } -- GitLab