fastqc.config 454 Bytes
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profiles {
  docker {
    docker.temp = 'auto'
    docker.enabled = true
    process {
      $fastqc {
        container = "fastqc:0.11.5"
      }
    }
  }
  sge {
    process{
      $fastqc {
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        beforeScript = "module purge; module load FastQC/0.11.5"
        executor = "sge"
        cpus = 1
        memory = "5GB"
        time = "6h"
        queueSize = 1000
        pollInterval = '60sec'
        queue = 'monointeldeb128'
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      }
    }
  }
}