diff --git a/src/bolero.nf b/src/bolero.nf index b96ae900d8bd3024bba0db86c04efdda135c8bf6..c341482eecc9a6d22e424890ad949f6f6054095b 100755 --- a/src/bolero.nf +++ b/src/bolero.nf @@ -240,7 +240,7 @@ workflow { if(params.gpu_mode) { basecall_fast5_gpu(input) if(params.kit_barcoding != ""){ - barcoding_gpu(pass) + barcoding_gpu(basecall_fast5_gpu.out.pass) barcoding_gpu.out.barcodes .flatten() .map{it -> [it.name, it]} @@ -248,9 +248,9 @@ workflow { concatenate(tuples_barcode) } else{ - concatenate(pass) + concatenate(basecall_fast5_gpu.out.pass) } - //control_basecalling(basecall_fast5_gpu.out.sequencing_summary) + control_basecalling(basecall_fast5_gpu.out.sequencing_summary) } else { basecall_fast5_cpu(input)