From d7067099e733c56b18921935318a2b9bc1532311 Mon Sep 17 00:00:00 2001
From: xgrand <xavier.grand@inserm.fr>
Date: Thu, 8 Jun 2023 11:14:13 +0200
Subject: [PATCH] Add pollux profile to nextflow.config
---
src/nextflow.config | 31 +++++++++++++++++++++++++++++++
1 file changed, 31 insertions(+)
diff --git a/src/nextflow.config b/src/nextflow.config
index 235bdd2..0ffe340 100755
--- a/src/nextflow.config
+++ b/src/nextflow.config
@@ -103,6 +103,37 @@ profiles {
}
}
}
+ pollux {
+ singularity.enabled = true
+ singularity.cacheDir = "./bin/"
+ singularity.bind = "/home"
+ process {
+ errorStrategy = 'finish'
+ memory = '256GB'
+ withLabel: big_mem_mono_cpus {
+ cpus = 1
+ }
+ withLabel: big_mem_multi_cpus {
+ cpus = 16
+ }
+ withLabel: small_mem_mono_cpus {
+ cpus = 1
+ memory = '2GB'
+ }
+ withLabel: small_mem_multi_cpus {
+ cpus = 8
+ memory = '2GB'
+ }
+ withLabel: mid_mem_mono_cpus {
+ cpus = 1
+ memory = '8GB'
+ }
+ withLabel: mid_mem_multi_cpus {
+ cpus = 8
+ memory = '8GB'
+ }
+ }
+ }
psmn {
charliecloud.enabled = true
charliecloud.cacheDir = "/Xnfs/abc/charliecloud"
--
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