From d52844c5cff61e1d60065bdc8e62bc43846e22a5 Mon Sep 17 00:00:00 2001
From: aliarifki <aliarifki@outlook.fr>
Date: Mon, 10 Jul 2023 11:56:54 +0200
Subject: [PATCH] =?UTF-8?q?nouveaux=20param=C3=A8tres=20minimap?=
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---
src/nf_modules/minimap2/main.nf | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/src/nf_modules/minimap2/main.nf b/src/nf_modules/minimap2/main.nf
index 91c9193..2ce7d8c 100755
--- a/src/nf_modules/minimap2/main.nf
+++ b/src/nf_modules/minimap2/main.nf
@@ -85,7 +85,7 @@ process hbv_transcriptome {
"""
}
-params.mapping_hbv_genome = "-ax splice --secondary=no -G 1650 -u n --eqx"
+params.mapping_hbv_genome = "-ax splice --secondary=no -u n --splice-flank=no --eqx"
process hbv_genome {
container = "${container_url}"
label "big_mem_multi_cpus"
--
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