diff --git a/src/nf_modules/minimap2/main.nf b/src/nf_modules/minimap2/main.nf index 91c91931b131b820a327686623a614cd26b4ab7a..2ce7d8ca37748ddf2441a8349fbc3fbca1153212 100755 --- a/src/nf_modules/minimap2/main.nf +++ b/src/nf_modules/minimap2/main.nf @@ -85,7 +85,7 @@ process hbv_transcriptome { """ } -params.mapping_hbv_genome = "-ax splice --secondary=no -G 1650 -u n --eqx" +params.mapping_hbv_genome = "-ax splice --secondary=no -u n --splice-flank=no --eqx" process hbv_genome { container = "${container_url}" label "big_mem_multi_cpus"