From ce4a2f623e96855923bfdeb3f4afcce8cc0581b2 Mon Sep 17 00:00:00 2001
From: xgrand <xavier.grand@inserm.fr>
Date: Fri, 26 May 2023 11:43:03 +0200
Subject: [PATCH] Change src/.docker_modules/r-scripts to
src/.docker_modules/r-bolero and corresponding files.
---
src/.docker_modules/r-bolero/1.0/Dockerfile | 11 +++++++++++
.../{r-scripts => r-bolero}/1.0/HBV_RNAs_count.R | 0
.../{r-scripts => r-bolero}/1.0/Install_packages.R | 0
.../1.0/Junctions_NanoSplicer.R | 0
.../{r-scripts => r-bolero}/1.0/Start_positions.R | 0
src/.docker_modules/r-bolero/1.0/docker_init.sh | 2 ++
src/.docker_modules/r-scripts/1.0/Dockerfile | 6 ------
src/.docker_modules/r-scripts/1.0/docker_init.sh | 2 --
8 files changed, 13 insertions(+), 8 deletions(-)
create mode 100644 src/.docker_modules/r-bolero/1.0/Dockerfile
rename src/.docker_modules/{r-scripts => r-bolero}/1.0/HBV_RNAs_count.R (100%)
mode change 100755 => 100644
rename src/.docker_modules/{r-scripts => r-bolero}/1.0/Install_packages.R (100%)
rename src/.docker_modules/{r-scripts => r-bolero}/1.0/Junctions_NanoSplicer.R (100%)
rename src/.docker_modules/{r-scripts => r-bolero}/1.0/Start_positions.R (100%)
mode change 100755 => 100644
create mode 100755 src/.docker_modules/r-bolero/1.0/docker_init.sh
delete mode 100644 src/.docker_modules/r-scripts/1.0/Dockerfile
delete mode 100755 src/.docker_modules/r-scripts/1.0/docker_init.sh
diff --git a/src/.docker_modules/r-bolero/1.0/Dockerfile b/src/.docker_modules/r-bolero/1.0/Dockerfile
new file mode 100644
index 0000000..3407ad5
--- /dev/null
+++ b/src/.docker_modules/r-bolero/1.0/Dockerfile
@@ -0,0 +1,11 @@
+FROM rocker/r-base:4.2.3
+LABEL AUTHOR="Alia Rifki"
+LABEL MAINTAINER="Xavier Grand <xavier.grand@inserm.fr>"
+LABEL build_date="2023-05-26"
+
+## copy Rscript files
+COPY ./*.R .
+
+RUN Rscript Install_packages.R
+
+CMD ["bash"]
diff --git a/src/.docker_modules/r-scripts/1.0/HBV_RNAs_count.R b/src/.docker_modules/r-bolero/1.0/HBV_RNAs_count.R
old mode 100755
new mode 100644
similarity index 100%
rename from src/.docker_modules/r-scripts/1.0/HBV_RNAs_count.R
rename to src/.docker_modules/r-bolero/1.0/HBV_RNAs_count.R
diff --git a/src/.docker_modules/r-scripts/1.0/Install_packages.R b/src/.docker_modules/r-bolero/1.0/Install_packages.R
similarity index 100%
rename from src/.docker_modules/r-scripts/1.0/Install_packages.R
rename to src/.docker_modules/r-bolero/1.0/Install_packages.R
diff --git a/src/.docker_modules/r-scripts/1.0/Junctions_NanoSplicer.R b/src/.docker_modules/r-bolero/1.0/Junctions_NanoSplicer.R
similarity index 100%
rename from src/.docker_modules/r-scripts/1.0/Junctions_NanoSplicer.R
rename to src/.docker_modules/r-bolero/1.0/Junctions_NanoSplicer.R
diff --git a/src/.docker_modules/r-scripts/1.0/Start_positions.R b/src/.docker_modules/r-bolero/1.0/Start_positions.R
old mode 100755
new mode 100644
similarity index 100%
rename from src/.docker_modules/r-scripts/1.0/Start_positions.R
rename to src/.docker_modules/r-bolero/1.0/Start_positions.R
diff --git a/src/.docker_modules/r-bolero/1.0/docker_init.sh b/src/.docker_modules/r-bolero/1.0/docker_init.sh
new file mode 100755
index 0000000..c9ff6c9
--- /dev/null
+++ b/src/.docker_modules/r-bolero/1.0/docker_init.sh
@@ -0,0 +1,2 @@
+docker build src/.docker_modules/r-bolero/1.0 -t 'xgrand/r-bolero:1.0'
+docker push xgrand/r-bolero:1.0
diff --git a/src/.docker_modules/r-scripts/1.0/Dockerfile b/src/.docker_modules/r-scripts/1.0/Dockerfile
deleted file mode 100644
index dfadf74..0000000
--- a/src/.docker_modules/r-scripts/1.0/Dockerfile
+++ /dev/null
@@ -1,6 +0,0 @@
-FROM rocker/r-base:4.2.3
-
-## copy Rscript files
-COPY ./*.R .
-
-RUN Rscript Install_packages.R
diff --git a/src/.docker_modules/r-scripts/1.0/docker_init.sh b/src/.docker_modules/r-scripts/1.0/docker_init.sh
deleted file mode 100755
index b0b0edb..0000000
--- a/src/.docker_modules/r-scripts/1.0/docker_init.sh
+++ /dev/null
@@ -1,2 +0,0 @@
-docker build src/.docker_modules/r-scripts/1.0 -t 'xgrand/r-scripts:1.0'
-docker push xgrand/r-scripts:1.0
--
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