From b62bc3f06885920e53f4f2cdad9ac662294b5ccb Mon Sep 17 00:00:00 2001
From: aliarifki <aliarifki@outlook.fr>
Date: Tue, 18 Jul 2023 14:00:07 +0200
Subject: [PATCH] =?UTF-8?q?Mise=20=C3=A0=20jour=20de=20CQ=20bam?=
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---
src/bolero.nf | 3 +--
1 file changed, 1 insertion(+), 2 deletions(-)
diff --git a/src/bolero.nf b/src/bolero.nf
index aea21e5..aef31c3 100755
--- a/src/bolero.nf
+++ b/src/bolero.nf
@@ -239,7 +239,6 @@ workflow {
concatenate(tuple_sample)
}
control_basecalling(basecall_fast5_gpu.out.sequencing_summary)
- control_bam(basecall_fast5_gpu.out.sequencing_summary.collect(), sort_index_bam.out.indexed_bam)
}
else {
@@ -278,7 +277,7 @@ workflow {
hbv_genome(cut_5pRACE.out.fastq_cutadapt, genome.collect())
sort_index_bam(hbv_genome.out.bam)
//il faut ajouter une boucle if pour le mode cpu/gpu
- //control_bam(ss.collect(), sort_index_bam.out.indexed_bam)
+ control_bam(basecall_fast5_gpu.out.sequencing_summary.collect(), sort_index_bam.out.indexed_bam)
//###################### START POSITIONS #######################
--
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