From a1448e34bf5a3c11711d7bea2cd13b7a8016319c Mon Sep 17 00:00:00 2001
From: aliarifki <aliarifki@outlook.fr>
Date: Wed, 31 May 2023 09:54:37 +0200
Subject: [PATCH] Format png des images issues des scripts R
---
src/.docker_modules/r-bolero/1.0/Start_positions.R | 4 ++--
src/nf_modules/junction_nanosplicer/main.nf | 2 +-
src/nf_modules/rna_count/main.nf | 2 +-
src/nf_modules/start_positions/main.nf | 2 +-
4 files changed, 5 insertions(+), 5 deletions(-)
diff --git a/src/.docker_modules/r-bolero/1.0/Start_positions.R b/src/.docker_modules/r-bolero/1.0/Start_positions.R
index f31afaa..830c52e 100644
--- a/src/.docker_modules/r-bolero/1.0/Start_positions.R
+++ b/src/.docker_modules/r-bolero/1.0/Start_positions.R
@@ -69,7 +69,7 @@ ggplot(df_parsed, aes(Start_position, nb_reads)) +
theme(axis.text.x = element_text(angle = 45)
)
-ggsave(paste0(filename,".jpg"),
+ggsave(paste0(filename,".png"),
plot = last_plot(),
scale = 2,
width = 1920,
@@ -201,7 +201,7 @@ plot_camembert <- function(barcode, df, tot) {
print(camembert)
- ggsave(filename = paste0("./Reads_start_promoters_", barcode, "_camembert.jpg"),
+ ggsave(filename = paste0("./Reads_start_promoters_", barcode, "_camembert.png"),
plot = last_plot(),
scale = 1,
width = 1920,
diff --git a/src/nf_modules/junction_nanosplicer/main.nf b/src/nf_modules/junction_nanosplicer/main.nf
index 9000bc8..9f0a209 100644
--- a/src/nf_modules/junction_nanosplicer/main.nf
+++ b/src/nf_modules/junction_nanosplicer/main.nf
@@ -17,7 +17,7 @@ process junctions_nanosplicer{
output:
path("Rplots.pdf")
path("JWR_check_parsed.csv")
- path("*.jpg")
+ path("*.png")
path("identified_SPvariants.csv"), emit: identified_SPvariants
script:
diff --git a/src/nf_modules/rna_count/main.nf b/src/nf_modules/rna_count/main.nf
index 4d9b6f4..a2ae2ce 100644
--- a/src/nf_modules/rna_count/main.nf
+++ b/src/nf_modules/rna_count/main.nf
@@ -17,7 +17,7 @@ process rna_count{
output:
path("*.csv")
path("*.pdf")
- path("*.jpg")
+ path("*.png")
script:
"""
diff --git a/src/nf_modules/start_positions/main.nf b/src/nf_modules/start_positions/main.nf
index 4b97e0c..27b8ebf 100644
--- a/src/nf_modules/start_positions/main.nf
+++ b/src/nf_modules/start_positions/main.nf
@@ -14,7 +14,7 @@ process start_position_individuals{
output:
path("Rplots.pdf")
- path("*.jpg")
+ path("*.png")
path("Count_reads_per_promoter.tsv")
path("classification_of_reads_per_RNA.txt"), emit: classification_of_reads
--
GitLab