From 8aafb7ae05d4a0240cea3c3b525637cec1abff7d Mon Sep 17 00:00:00 2001
From: aliarifki <aliarifki@outlook.fr>
Date: Mon, 17 Jul 2023 10:15:23 +0200
Subject: [PATCH] =?UTF-8?q?Mise=20=C3=A0=20jour=20du=20script?=
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---
src/bolero.nf | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/src/bolero.nf b/src/bolero.nf
index 5b2e666..852617c 100755
--- a/src/bolero.nf
+++ b/src/bolero.nf
@@ -223,9 +223,9 @@ workflow {
//il reste à adapter ça
else { // we take fast5 files as input and proceed to basecalling with guppy
if(params.gpu_mode) {
- //basecall_fast5_gpu(input)
+ basecall_fast5_gpu(input)
if(params.kit_barcoding != ""){
- barcoding_gpu(pass)
+ barcoding_gpu(basecall_fast5_gpu.out.pass)
barcoding_gpu.out.barcodes
.flatten()
.map{it -> [it.name, it]}
@@ -233,7 +233,7 @@ workflow {
concatenate(tuples_barcode)
}
else{
- pass
+ basecall_fast5_gpu.out.pass
.map{it -> ["Sample", it]}
.set{tuple_sample}
concatenate(tuple_sample)
--
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