From 76648e761ea09428f633f0ff01b07d102013181a Mon Sep 17 00:00:00 2001
From: xgrand <xavier.grand@ens-lyon.fr>
Date: Tue, 2 Jul 2024 10:59:26 +0200
Subject: [PATCH] Modify README.md

---
 README.md | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/README.md b/README.md
index a68d16e..1450578 100755
--- a/README.md
+++ b/README.md
@@ -24,8 +24,8 @@ The arguments of this pipeline are described in the table below:
 | -profile      | The profile to use. This can be **docker** or **singularity** to run the pipeline in docker or singularity container respectively. This can also be **psmn** to launch the analysis on the PSMN | 
 | --input [path] | Path to the folder containing fast5 files. If skip basecalling option enabled, path to fastq files folder. |
 | --adapt [str] | Sequence of 5'RACE adapter. |
-| --genome [file] | Path to the fasta file containing the genome. |
-| --gtf [file] | Path to the gtf file containing the genome annotation. |
+| --genome [file] | Path to the fasta file containing the genome. HBV reference sequence preCore available in data folder. |
+| --gtf [file] | Path to the gtf file containing the genome annotation. HBV reference preCore annotation available in data folder. |
 | --skipBC [boolean] | Skip basecalling step. If truen give fastq folder as input. Default: true. |
 | --flowcell [str] | Nanopore flowcell. Default = FLO-MIN106. |
 | --kit [str] | Nanopore kit. Default = SQK-PBK004. |
-- 
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