diff --git a/src/nf_modules/ont-guppy/main.nf b/src/nf_modules/ont-guppy/main.nf index 5704bb7596e7c1820247724341fb15316704b42f..de5119cd1d5d799707156263f29da14ff365a4d5 100644 --- a/src/nf_modules/ont-guppy/main.nf +++ b/src/nf_modules/ont-guppy/main.nf @@ -60,7 +60,8 @@ guppy_basecaller --compress_fastq \ --gpu_runners_per_device ${params.gpu_runners_per_device} \ --num_callers ${params.num_callers} \ --chunks_per_runner ${params.chunks_per_runner} \ - ${options} + --flowcell ${params.flowcell} \ + --kit ${params.kit} """ }