From 2ffaef30d6c32fc9026c5f633db1e1d155306008 Mon Sep 17 00:00:00 2001
From: aliarifki <aliarifki@outlook.fr>
Date: Thu, 22 Jun 2023 11:32:22 +0200
Subject: [PATCH] Modification du nom du process
---
src/nf_modules/pycoqc/main.nf | 21 ++++++++++++++++++++-
1 file changed, 20 insertions(+), 1 deletion(-)
diff --git a/src/nf_modules/pycoqc/main.nf b/src/nf_modules/pycoqc/main.nf
index 1951dbf..1a70997 100644
--- a/src/nf_modules/pycoqc/main.nf
+++ b/src/nf_modules/pycoqc/main.nf
@@ -1,7 +1,26 @@
version = "2.5.2"
container_url = "xgrand/pycoqc:${version}"
-process pycoqc {
+process control_basecalling {
+ container = "${container_url}"
+ label "small_mem_mono_cpus"
+
+ if (params.basecalling_out != "") {
+ publishDir "results/${params.basecalling_out}", mode: 'copy'
+ }
+
+ input:
+ path(txt)
+
+ output:
+ path("*.html")
+
+ """
+ pycoQC -f ${txt} -o quality_control.html)
+ """
+}
+
+process control_bam {
container = "${container_url}"
label "small_mem_mono_cpus"
--
GitLab