From 2c3f05615d6f392e136b6536f8a94cb8f3c58534 Mon Sep 17 00:00:00 2001
From: aliarifki <aliarifki@outlook.fr>
Date: Thu, 29 Jun 2023 15:57:54 +0200
Subject: [PATCH] Suppression du channel pass en mode gpu
---
src/bolero.nf | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/src/bolero.nf b/src/bolero.nf
index f6462fa..35afde5 100755
--- a/src/bolero.nf
+++ b/src/bolero.nf
@@ -222,7 +222,7 @@ workflow {
if(params.gpu_mode) {
basecall_fast5_gpu(input)
if(params.kit_barcoding != ""){
- barcoding_gpu(pass)
+ barcoding_gpu(basecall_fast5_gpu.out.pass)
barcoding_gpu.out.barcodes
.flatten()
.map{it -> [it.name, it]}
@@ -230,9 +230,9 @@ workflow {
concatenate(tuples_barcode)
}
else{
- concatenate(pass)
+ concatenate(basecall_fast5_gpu.out.pass)
}
- //control_basecalling(basecall_fast5_gpu.out.sequencing_summary)
+ control_basecalling(basecall_fast5_gpu.out.sequencing_summary)
}
else {
basecall_fast5_cpu(input)
--
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