diff --git a/src/bolero.nf b/src/bolero.nf index f6462faaf17ed7629b86be920a990d396a2cfe6e..35afde56bf6e89b05d28d82408c888e3ccea5ad7 100755 --- a/src/bolero.nf +++ b/src/bolero.nf @@ -222,7 +222,7 @@ workflow { if(params.gpu_mode) { basecall_fast5_gpu(input) if(params.kit_barcoding != ""){ - barcoding_gpu(pass) + barcoding_gpu(basecall_fast5_gpu.out.pass) barcoding_gpu.out.barcodes .flatten() .map{it -> [it.name, it]} @@ -230,9 +230,9 @@ workflow { concatenate(tuples_barcode) } else{ - concatenate(pass) + concatenate(basecall_fast5_gpu.out.pass) } - //control_basecalling(basecall_fast5_gpu.out.sequencing_summary) + control_basecalling(basecall_fast5_gpu.out.sequencing_summary) } else { basecall_fast5_cpu(input)