diff --git a/src/nf_modules/ont-guppy/main.nf b/src/nf_modules/ont-guppy/main.nf index 0b5b0f78a56ebadd9c415d4b582aa25b68e05c6d..3753d59efbae99f4ec8496191109d07a8deef5a1 100644 --- a/src/nf_modules/ont-guppy/main.nf +++ b/src/nf_modules/ont-guppy/main.nf @@ -60,7 +60,8 @@ guppy_basecaller --compress_fastq \ --gpu_runners_per_device ${params.gpu_runners_per_device} \ --num_callers ${params.num_callers} \ --chunks_per_runner ${params.chunks_per_runner} \ - ${options} + --flowcell ${params.flowcell} \ + --kit ${params.kit} """ }