FROM alpine:3.8
MAINTAINER Xavier Grand <xavier.grand@ens-lyon.fr>

ENV CUTADAPT_VERSION=2.8
ENV PACKAGES bash \
             python3 \
             python3-dev \
             musl-dev \
             gcc

RUN apk update && \
    apk add ${PACKAGES}

RUN pip3 install --upgrade pip && \
  pip3 install cutadapt==${CUTADAPT_VERSION}