From fdb6eac66209a6c2d927e1d83a6592dc679a16e0 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Wed, 12 May 2021 10:53:54 +0200
Subject: [PATCH] kb: fix t2g.py to have first transcript and then gene
---
src/.docker_modules/kb/0.26.0/t2g.py | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/src/.docker_modules/kb/0.26.0/t2g.py b/src/.docker_modules/kb/0.26.0/t2g.py
index e40bb063..82f2a1da 100755
--- a/src/.docker_modules/kb/0.26.0/t2g.py
+++ b/src/.docker_modules/kb/0.26.0/t2g.py
@@ -20,4 +20,4 @@ if __name__ == "__main__":
with open("t2g.txt", "w") as t2g:
for gene in db.all_features():
for transcript in db.children(gene, featuretype='transcript', order_by='start'):
- t2g.write(str(gene["gene_id"][0]) + "\t" + str(transcript["transcript_id"][0]) + "\n")
+ t2g.write(str(transcript["transcript_id"][0]) + "\t" + str(gene["gene_id"][0]) + "\n")
--
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