From f97523284f51127edff4ba5a4a2ea44a28e43769 Mon Sep 17 00:00:00 2001
From: xgrand <xavier.grand@ens-lyon.fr>
Date: Wed, 1 Sep 2021 14:37:04 +0200
Subject: [PATCH] binsize modification in deeptools main.nf function
bamtobigwig
---
src/chipster.nf | 2 +-
src/nf_modules/deeptools/main.nf | 2 +-
2 files changed, 2 insertions(+), 2 deletions(-)
diff --git a/src/chipster.nf b/src/chipster.nf
index c81216d6..903711d2 100755
--- a/src/chipster.nf
+++ b/src/chipster.nf
@@ -20,7 +20,7 @@ params.paired_end = true
*/
params.fastq = "data/tinyTestDataset/fastq/*_{1,2}.fastq"
-/* Fastq files containing ribosome footprint
+/* Fastq files
@type: Files
*/
diff --git a/src/nf_modules/deeptools/main.nf b/src/nf_modules/deeptools/main.nf
index 97e4027d..25468706 100644
--- a/src/nf_modules/deeptools/main.nf
+++ b/src/nf_modules/deeptools/main.nf
@@ -41,7 +41,7 @@ process bam_to_bigwig {
script:
"""
-bamCoverage -p ${task.cpus} --ignoreDuplicates -b ${bam} \
+bamCoverage -p ${task.cpus} --ignoreDuplicates -bs 10 -b ${bam} \
-o ${bam.simpleName}.bw
"""
}
--
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