diff --git a/src/chipster.nf b/src/chipster.nf index c81216d6fb8fdc79dae6f92a0e3365bb0f940786..903711d25789a1a2f763f91ab82bc83aa9cac54e 100755 --- a/src/chipster.nf +++ b/src/chipster.nf @@ -20,7 +20,7 @@ params.paired_end = true */ params.fastq = "data/tinyTestDataset/fastq/*_{1,2}.fastq" -/* Fastq files containing ribosome footprint +/* Fastq files @type: Files */ diff --git a/src/nf_modules/deeptools/main.nf b/src/nf_modules/deeptools/main.nf index 97e4027de2f91930c5fd227c29b0b563b9f3c027..254687066cf4ab4eb8b103c51261fb0074e5c27a 100644 --- a/src/nf_modules/deeptools/main.nf +++ b/src/nf_modules/deeptools/main.nf @@ -41,7 +41,7 @@ process bam_to_bigwig { script: """ -bamCoverage -p ${task.cpus} --ignoreDuplicates -b ${bam} \ +bamCoverage -p ${task.cpus} --ignoreDuplicates -bs 10 -b ${bam} \ -o ${bam.simpleName}.bw """ }