diff --git a/doc/TP_experimental_biologists.md b/doc/TP_experimental_biologists.md index 5d72a3819a88e59e9022056933c10c424ec8d81d..f3291091d04cceb37f7df65bdf6e3117a5e6e7d8 100644 --- a/doc/TP_experimental_biologists.md +++ b/doc/TP_experimental_biologists.md @@ -26,7 +26,7 @@ You are going to build a pipeline for you or your team. So the first step is to ## Forking Instead of reinventing the wheel, you can use the [pipelines/nextflow](https://gitlab.biologie.ens-lyon.fr/pipelines/nextflow) as a template. -To easily do so, go to the [pipelines/nextflow](https://gitlab.biologie.ens-lyon.fr/pipelines/nextflow) repository and click on the [**fork**](https://gitlab.biologie.ens-lyon.fr/pipelines/nextflow/forks/new) button. +To easily do so, go to the [pipelines/nextflow](https://gitlab.biologie.ens-lyon.fr/pipelines/nextflow) repository and click on the [**fork**](https://gitlab.biologie.ens-lyon.fr/pipelines/nextflow/forks/new) button (you need to log-in).  diff --git a/src/.docker_modules/umi_tools/1.0.0/Dockerfile b/src/.docker_modules/umi_tools/1.0.0/Dockerfile index fee8aa46f3f27d30c0ea1bdcaee1a2abe974ac6e..d82cc9a6c7dc0877522149912b09899f7879ede9 100644 --- a/src/.docker_modules/umi_tools/1.0.0/Dockerfile +++ b/src/.docker_modules/umi_tools/1.0.0/Dockerfile @@ -3,11 +3,18 @@ MAINTAINER Rémi SERAPHIN ENV UMI_TOOLS_VERSION=1.0.0 ENV PACKAGES="bash \ - python3 \ - python3-dev \ - python3-pip \ - procps \ - gcc" + python3 \ + python3-dev \ + python3-pip \ + procps \ + zlib1g-dev \ + zlib1g \ + bzip2 \ + libbz2-dev \ + liblzma-dev \ + libcurl4-openssl-dev \ + make \t + gcc" RUN apt-get update && \ apt-get install -y --no-install-recommends ${PACKAGES} && \