From edd04712ff714b7db8a6d569b42e26edc4aa49d9 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Fri, 1 Mar 2019 15:58:13 +0100
Subject: [PATCH] bedtools: update singularity path
---
src/nf_modules/BEDtools/fasta_from_bed.config | 2 +-
src/singularity_modules/BEDtools/2.25.0/build.sh | 2 +-
2 files changed, 2 insertions(+), 2 deletions(-)
diff --git a/src/nf_modules/BEDtools/fasta_from_bed.config b/src/nf_modules/BEDtools/fasta_from_bed.config
index 47a8bd94..5311e9f5 100644
--- a/src/nf_modules/BEDtools/fasta_from_bed.config
+++ b/src/nf_modules/BEDtools/fasta_from_bed.config
@@ -13,7 +13,7 @@ profiles {
singularity.enabled = true
process {
withName: trimming {
- container = "file:///bin/bedtools:2.25.0.sif"
+ container = "file://bin/bedtools:2.25.0.sif"
cpus = 1
}
}
diff --git a/src/singularity_modules/BEDtools/2.25.0/build.sh b/src/singularity_modules/BEDtools/2.25.0/build.sh
index a7c8b822..668a40c6 100755
--- a/src/singularity_modules/BEDtools/2.25.0/build.sh
+++ b/src/singularity_modules/BEDtools/2.25.0/build.sh
@@ -1,2 +1,2 @@
#/bin/sh
-sudo singularity build --force /bin/bedtools:2.25.0.sif src/singularity_modules/BEDtools/2.25.0/BEDtools.def
+sudo singularity build --force bin/bedtools:2.25.0.sif src/singularity_modules/BEDtools/2.25.0/BEDtools.def
--
GitLab