diff --git a/src/nf_modules/UrQt/trimming_paired.config b/src/nf_modules/UrQt/trimming_paired.config index 46a86729f1367966225fcb37c5ef7f11070c7255..c34e6d4e02ecb3bfd0b71f970edc746b3465e8a9 100644 --- a/src/nf_modules/UrQt/trimming_paired.config +++ b/src/nf_modules/UrQt/trimming_paired.config @@ -3,24 +3,24 @@ profiles { docker.temp = 'auto' docker.enabled = true process { - $trimming { + withName: trimming { container = "urqt:d62c1f8" } } } sge { process{ - $trimming { - beforeScript = "module purge; module load UrQt/d62c1f8" + withName: trimming { + beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules" + module = "UrQt/d62c1f8" executor = "sge" - cpus = 4 + cpus = 16 memory = "5GB" - time = "6h" - queueSize = 1000 - pollInterval = '60sec' - queue = 'h6-E5-2667v4deb128' - penv = 'openmp8' + time = "12h" + queue = 'E5-2670deb128A,E5-2670deb128B,E5-2670deb128C,E5-2670deb128D,E5-2670deb128E,E5-2670deb128F' + penv = 'openmp16' } } } } + diff --git a/src/nf_modules/UrQt/trimming_single.config b/src/nf_modules/UrQt/trimming_single.config index 46a86729f1367966225fcb37c5ef7f11070c7255..c34e6d4e02ecb3bfd0b71f970edc746b3465e8a9 100644 --- a/src/nf_modules/UrQt/trimming_single.config +++ b/src/nf_modules/UrQt/trimming_single.config @@ -3,24 +3,24 @@ profiles { docker.temp = 'auto' docker.enabled = true process { - $trimming { + withName: trimming { container = "urqt:d62c1f8" } } } sge { process{ - $trimming { - beforeScript = "module purge; module load UrQt/d62c1f8" + withName: trimming { + beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules" + module = "UrQt/d62c1f8" executor = "sge" - cpus = 4 + cpus = 16 memory = "5GB" - time = "6h" - queueSize = 1000 - pollInterval = '60sec' - queue = 'h6-E5-2667v4deb128' - penv = 'openmp8' + time = "12h" + queue = 'E5-2670deb128A,E5-2670deb128B,E5-2670deb128C,E5-2670deb128D,E5-2670deb128E,E5-2670deb128F' + penv = 'openmp16' } } } } +