diff --git a/src/nf_modules/sratoolkit/fastqdump.config b/src/nf_modules/sratoolkit/fastqdump.config index 0d5acb9f7eda6159f06cb548a98c4b5248dd0685..ee6ed1fa378034ef2bccb1e643cab9cfb7e3ea5d 100644 --- a/src/nf_modules/sratoolkit/fastqdump.config +++ b/src/nf_modules/sratoolkit/fastqdump.config @@ -13,7 +13,7 @@ profiles { singularity.enabled = true process { withName: split_bam { - container = "file://bin/sambamba:0.6.7.img" + container = "file://bin/sratoolkit:2.8.2.img" cpus = 1 } } @@ -53,7 +53,7 @@ profiles { singularity.runOptions = "--bind /pbs,/sps,/scratch" process{ withName: fastq_dump { - container = "/sps/lbmc/common/singularity/sambamba:0.6.7.img" + container = "/sps/lbmc/common/singularity/sratoolkit:2.8.2.img" scratch = true stageInMode = "copy" stageOutMode = "rsync"